RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA744060 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10927218 10927218 PRJNA744060_P_NODE_2949_length_899_cov_4.039952_g2692_i0 PRJNA744060 2949 899 4.039952 36.31916848 Pristionchus sp. 15 RS5229 452809 Nematoda Nematoda 248 1.08e-60   NTclustered gi|150982261|gb|EF634719.1| 452809 g2692 i0 82.971 6.71078976640712 276 43 30 4 76 349 30 303 Pristionchus sp. 15 RS5229 large subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 6033 248 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 15 RS5229
13477489 13477489 PRJNA744060_P_NODE_5671_length_663_cov_20.220339_g5356_i0 PRJNA744060 5671 663 20.220339 134.06084757 Pristionchus uniformis 358041 Nematoda Nematoda 217 2.21e-51   NTclustered gi|256861444|gb|GQ422182.1| 358041 g5356 i0 77.461 17.2564102564103 386 71 57 14 241 618 151 528 Pristionchus uniformis large subunit ribosomal protein 9 (rpl-9) mRNA, partial cds blastn 11441 217 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus uniformis
17301842 17301842 PRJNA744060_P_NODE_7974_length_564_cov_2.397149_g7649_i0 PRJNA744060 7974 564 2.397149 13.51992036 Brugia malayi 6279 Nematoda Nematoda 54.7 0.015   NTclustered gi|2082291043|ref|XM_043073249.1| 6279 g7649 i0 94.286 0.124113475177305 35 2 6 0 24 58 2953 2987 Brugia malayi Uncharacterized protein (Bma-unc-82), partial mRNA blastn 70 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
19050276 19050276 PRJNA744060_P_NODE_8435_length_549_cov_9.978992_g8110_i0 PRJNA744060 8435 549 9.978992 54.78466608 Rhabditida 6236 Nematoda Nematoda 300 1.75e-76   NTclustered gi|150982035|gb|EF634606.1| 358044 g8110 i0 82.336 62.5901639344262 351 56 63 3 74 421 61 408 Koerneria sp. RS1982 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 34362 300 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
19850710 19850710 PRJNA744060_P_NODE_6216_length_635_cov_2.887900_g5896_i0 PRJNA744060 6216 635 2.8879 18.338165 Strongyloides ratti 34506 Nematoda Nematoda 496 2.42e-135   NTclustered gi|1376147725|ref|XM_024654528.1| 34506 g5896 i0 81.433 60.1448818897638 614 106 96 8 21 630 1350 741 Strongyloides ratti ATP synthase subunit alpha, mitochondrial (SRAE_2000334600), partial mRNA blastn 38192 496 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
24150143 24150143 PRJNA744060_P_NODE_40539_length_261_cov_2.351064_g40210_i0 PRJNA744060 40539 261 2.351064 6.13627704 Metazoa 33208 Nematoda Nematoda 196 1.04e-45   NTclustered gi|23306675|gb|AY137471.1| 6233 g40210 i0 81.557 74.3831417624521 244 40 93 3 6 248 840 601 Panagrellus redivivus heat shock protein 70-C mRNA, complete cds blastn 19414 196 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrellus Panagrellus redivivus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;