RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA744060 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3274726 3274726 PRJNA744060_P_NODE_36703_length_273_cov_2.130000_g36374_i0 PRJNA744060 36703 273 2.13 5.8149 Metamycoplasma gateae 35769 Bacteria Bacteria 58.4 5.39e-4   NTclustered gi|2668340636|gb|CP143578.1| 35769 g36374 i0 100 0.113553113553114 31 0 11 0 228 258 496490 496460 Metamycoplasma gateae strain 3700 chromosome, complete genome blastn 31 58.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma gateae
4551728 4551728 PRJNA744060_P_NODE_2604_length_950_cov_6.110604_g2360_i0 PRJNA744060 2604 950 6.110604 58.050738 Mycoplasmopsis edwardii 53558 Bacteria Bacteria 255 6.83e-63   NTclustered gi|2425261263|gb|CP114370.1| 53558 g2360 i0 74.351 2.53263157894737 655 142 83 21 201 843 350762 350122 Mycoplasmopsis edwardii strain felid995 chromosome, complete genome blastn 2406 255 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis edwardii
5026746 5026746 PRJNA744060_P_NODE_22744_length_340_cov_1.468165_g22415_i0 PRJNA744060 22744 340 1.468165 4.991761 Mycoplasmopsis 2767358 Bacteria Bacteria 628 1.1699999999999999e-175   NTclustered gi|2639791867|gb|CP141038.1| 171284 g22415 i0 100 211.120588235294 340 0 100 0 1 340 414755 415094 Mycoplasmopsis cynos strain 64228 chromosome, complete genome blastn 71781 628 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos
6302563 6302563 PRJNA744060_P_NODE_9525_length_518_cov_5.476404_g9198_i0 PRJNA744060 9525 518 5.476404 28.36777272 Mycoplasmopsis 2767358 Bacteria Bacteria 56.5 0.004   NTclustered gi|2639791867|gb|CP141038.1| 171284 g9198 i0 100 1.56370656370656 30 0 6 0 428 457 367271 367300 Mycoplasmopsis cynos strain 64228 chromosome, complete genome blastn 810 56.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis cynos
9651570 9651570 PRJNA744060_P_NODE_21348_length_350_cov_2.061372_g21019_i0 PRJNA744060 21348 350 2.061372 7.214802 Mesomycoplasma lagogenitalium 171286 Bacteria Bacteria 54.7 0.009   NTclustered gi|2495165145|gb|CP122979.1| 171286 g21019 i0 100 0.082857142857142893 29 0 8 0 219 247 615578 615550 Mesomycoplasma lagogenitalium strain 12MS chromosome, complete genome blastn 29 54.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma lagogenitalium
18575282 18575282 PRJNA744060_P_NODE_50035_length_243_cov_6.029412_g49706_i0 PRJNA744060 50035 243 6.029412 14.65147116 Mycoplasmopsis maculosa 114885 Bacteria Bacteria 67.6 7.82e-7   NTclustered gi|1563804680|emb|LR215037.1| 114885 g49706 i0 93.333 0.185185185185185 45 3 19 0 194 238 310496 310452 Mycoplasma maculosum strain NCTC10168 genome assembly, chromosome: 1 blastn 45 67.6 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis maculosa

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;