RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA744060 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3274515 3274515 PRJNA744060_P_NODE_2563_length_956_cov_5.693092_g2321_i0 PRJNA744060 2563 956 5.693092 54.42595952 Tepidiforma bonchosmolovskayae 2601677 Bacteria Bacteria 429 3.8299999999999997e-115   NTclustered gi|1756502384|gb|CP042829.1| 2601677 g2321 i0 78.571 33.1987447698745 686 122 71 19 239 916 945770 946438 Tepidiforma bonchosmolovskayae strain 3753O chromosome, complete genome blastn 31738 429 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae Tepidiforma Tepidiforma bonchosmolovskayae
22400343 22400343 PRJNA744060_P_NODE_10698_length_490_cov_1.609113_g10370_i0 PRJNA744060 10698 490 1.609113 7.8846537 uncultured Chloroflexi bacterium HF0200_09I09 710736 Bacteria Bacteria 542 2.3299999999999998e-149   NTclustered gi|297181775|gb|GU474878.1| 710736 g10370 i0 86.694 650.585714285714 496 56 100 7 1 490 9772 10263 Uncultured Chloroflexi bacterium HF0200_09I09 genomic sequence blastn 318787 542 1 Bacteria   Bacillati Chloroflexota         uncultured Chloroflexi bacterium HF0200_09I09

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;