RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA744060 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3274950 3274950 PRJNA744060_P_NODE_51283_length_242_cov_0.923077_g50954_i0 PRJNA744060 51283 242 0.923077 2.23384634 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 440 3.9799999999999986e-119   NTclustered gi|971146634|emb|LN879502.1| 389348 g50954 i0 99.587 1 242 0 100 1 1 242 2392000 2391760 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 242 440 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
5826669 5826669 PRJNA744060_P_NODE_21525_length_349_cov_1.130435_g21196_i0 PRJNA744060 21525 349 1.130435 3.94521815 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 645 1.1899999999999993e-180   NTclustered gi|971146634|emb|LN879502.1| 389348 g21196 i0 100 1 349 0 100 0 1 349 639430 639778 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 349 645 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
7101790 7101790 PRJNA744060_P_NODE_21126_length_352_cov_1.670251_g20797_i0 PRJNA744060 21126 352 1.670251 5.87928352 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 651 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g20797 i0 100 1 352 0 100 0 1 352 1147869 1147518 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 352 651 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
7101875 7101875 PRJNA744060_P_NODE_25166_length_324_cov_1.243028_g24837_i0 PRJNA744060 25166 324 1.243028 4.02741072 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 599 8.67e-167   NTclustered gi|971146634|emb|LN879502.1| 389348 g24837 i0 100 16.4043209876543 324 0 100 0 1 324 2024393 2024716 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 5315 599 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
13477273 13477273 PRJNA744060_P_NODE_41451_length_259_cov_1.559140_g41122_i0 PRJNA744060 41451 259 1.55914 4.0381726 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 479 9.13e-131   NTclustered gi|971146634|emb|LN879502.1| 389348 g41122 i0 100 1.93436293436293 259 0 100 0 1 259 386592 386850 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 501 479 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
19850526 19850526 PRJNA744060_P_NODE_44016_length_253_cov_0.866667_g43687_i0 PRJNA744060 44016 253 0.866667 2.19266751 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 468 1.92e-127   NTclustered gi|971146634|emb|LN879502.1| 389348 g43687 i0 100 1 253 0 100 0 1 253 1863055 1863307 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 253 468 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
23676574 23676574 PRJNA744060_P_NODE_47539_length_247_cov_1.729885_g47210_i0 PRJNA744060 47539 247 1.729885 4.27281595 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 457 4.05e-124   NTclustered gi|971146634|emb|LN879502.1| 389348 g47210 i0 100 1 247 0 100 0 1 247 1655820 1655574 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 247 457 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;