RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA744060 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
723020 723020 PRJNA744060_P_NODE_19301_length_367_cov_10.102041_g18972_i0 PRJNA744060 19301 367 10.102041 37.07449047 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 132 4.35e-26   NTclustered gi|27734406|gb|AY099118.1| 227086 g18972 i0 90.909 33.6594005449591 99 7 27 2 270 367 272 175 Chlorarachnion CCMP621 isolate pub1 polyubiquitin mRNA, complete cds blastn 12353 132 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
8377039 8377039 PRJNA744060_P_NODE_7267_length_590_cov_7.205029_g6944_i0 PRJNA744060 7267 590 7.205029 42.5096711 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 185 5.509999999999999e-42   NTclustered gi|47028284|gb|AY542983.1| 227086 g6944 i0 81.696 10.6118644067797 224 39 38 2 368 590 461 239 Bigelowiella natans calmodulin mRNA, complete cds blastn 6261 185 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
9652185 9652185 PRJNA744060_P_NODE_8728_length_540_cov_12.231263_g8403_i0 PRJNA744060 8728 540 12.231263 66.0488202 Gymnophrys sp. ATCC 50923 646463 SAR_Eukaryotes SAR_Eukaryotes 599 1.51e-166   NTclustered gi|238617638|gb|FJ973398.1| 646463 g8403 i0 87.03 99.4481481481481 532 67 98 2 10 540 837 307 Gymnophrys sp. ATCC 50923 actin (act) gene, partial cds blastn 53702 599 1 Eukaryota Sar   Cercozoa       Gymnophrys Gymnophrys sp. ATCC 50923
14751953 14751953 PRJNA744060_P_NODE_17972_length_380_cov_2.576547_g17643_i0 PRJNA744060 17972 380 2.576547 9.7908786 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 411 5.189999999999999e-110   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g17643 i0 87.297 50.6368421052632 370 33 97 7 12 380 4021 3665 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 19242 411 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
14752332 14752332 PRJNA744060_P_NODE_39692_length_264_cov_1.340314_g39363_i0 PRJNA744060 39692 264 1.340314 3.53842896 Proleptomonas faecicola 149084 SAR_Eukaryotes SAR_Eukaryotes 320 5.99e-83   NTclustered gi|302026150|gb|GQ377654.1| 149084 g39363 i0 88.889 37.7424242424242 261 28 99 1 4 264 867 608 Proleptomonas faecicola beta-tubulin (Btub) gene, partial cds blastn 9964 320 1 Eukaryota Sar   Cercozoa   Glissomonadida   Proleptomonas Proleptomonas faecicola
21126263 21126263 PRJNA744060_P_NODE_6337_length_629_cov_53.994604_g6017_i0 PRJNA744060 6337 629 53.994604 339.62605916 Chlorarachniophyceae sp. 2303673 SAR_Eukaryotes SAR_Eukaryotes 207 1.26e-48   NTclustered gi|2071061694|gb|MZ611732.1| 2303673 g6017 i0 79.479 45.3068362480127 307 51 63 12 172 475 664 961 Chlorarachniophyceae sp. isolate AL-FL05 small subunit ribosomal RNA gene, partial sequence blastn 28498 207 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae       Chlorarachniophyceae sp.
23676532 23676532 PRJNA744060_P_NODE_4399_length_750_cov_1.639586_g4104_i0 PRJNA744060 4399 750 1.639586 12.296895 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 918 0   NTclustered gi|238617630|gb|FJ973394.1| 188950 g4104 i0 88.8 96.6013333333333 750 82 99 2 1 749 16 764 Bodomorpha minima strain ATCC 50339 actin (act) gene, partial cds blastn 72451 918 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;