RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA744060 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3274592 3274592 PRJNA744060_P_NODE_29623_length_300_cov_2.370044_g29294_i0 PRJNA744060 29623 300 2.370044 7.110132 Malaciobacter halophilus 197482 Bacteria Bacteria 52.8 0.028   NTclustered gi|1435905597|gb|CP031218.1| 197482 g29294 i0 100 0.0933333333333333 28 0 9 0 241 268 1117331 1117358 Malaciobacter halophilus strain CCUG 53805 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter halophilus
10127172 10127172 PRJNA744060_P_NODE_29828_length_299_cov_2.561947_g29499_i0 PRJNA744060 29828 299 2.561947 7.66022153 Campylobacter 194 Bacteria Bacteria 189 2.0299999999999993e-43   NTclustered gi|1733427401|gb|CP043426.1| 488545 g29499 i0 79.771 80.819397993311 262 51 87 2 23 283 168309 168569 Campylobacter lari subsp. concheus strain LMG 21009 chromosome, complete genome blastn 24165 189 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari
13477022 13477022 PRJNA744060_P_NODE_27571_length_310_cov_2.616034_g27242_i0 PRJNA744060 27571 310 2.616034 8.1097054 Candidatus Sulfurimonas marisnigri 2740405 Bacteria Bacteria 80.5 1.33e-10   NTclustered gi|1929274859|gb|CP054493.1| 2740405 g27242 i0 100 1.8 43 0 18 0 147 189 1752065 1752023 Candidatus Sulfurimonas marisnigri strain SoZ1 chromosome, complete genome blastn 558 80.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurimonadaceae Sulfurimonas Candidatus Sulfurimonas marisnigri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;