RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA744060 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8376437 8376437 PRJNA744060_P_NODE_2227_length_1012_cov_5.479233_g2006_i0 PRJNA744060 2227 1012 5.479233 55.44983796 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 425 5.25e-114   NTclustered gi|657012367|gb|KF302531.1| 2850 g2006 i0 87.071 54.5691699604743 379 46 37 3 364 741 393 17 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 55224 425 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
16025503 16025503 PRJNA744060_P_NODE_12513_length_453_cov_2.418421_g12185_i0 PRJNA744060 12513 453 2.418421 10.95544713 Ditylum brightwellii 49249 SAR_Eukaryotes SAR_Eukaryotes 403 1.0499999999999997e-107   NTclustered gi|398372885|gb|JX305463.1| 49249 g12185 i0 82.927 98.0618101545254 451 73 99 4 1 449 1106 1554 Ditylum brightwellii strain B-326 heat shock protein 70 (Hsp70) mRNA, complete cds blastn 44422 403 1 Eukaryota Sar   Bacillariophyta Mediophyceae Lithodesmiales Lithodesmiaceae Ditylum Ditylum brightwellii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;