RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA744060" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA744060 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9651432 9651432 PRJNA744060_P_NODE_1428_length_1203_cov_6.512389_g1261_i0 PRJNA744060 1428 1203 6.512389 78.34403967 Granulicella sp. 5B5 1617967 Bacteria Bacteria 547 1.2799999999999995e-150   NTclustered gi|1886125103|gb|CP046444.1| 1617967 g1261 i0 78.499 61.5394846217789 893 151 72 35 146 1016 2542748 2543621 Granulicella sp. 5B5 chromosome, complete genome blastn 74032 547 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella sp. 5B5
12202705 12202705 PRJNA744060_P_NODE_29390_length_301_cov_2.526316_g29061_i0 PRJNA744060 29390 301 2.526316 7.60421116 Tunturiibacter psychrotolerans 3069686 Bacteria Bacteria 87.9 7.68e-13   NTclustered gi|2750702178|gb|CP132942.1| 3069686 g29061 i0 96.226 0.458471760797342 53 2 18 0 232 284 5381513 5381565 Tunturiibacter psychrotolerans strain X5P6 chromosome blastn 138 87.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Tunturiibacter Tunturiibacter psychrotolerans
22400841 22400841 PRJNA744060_P_NODE_37138_length_272_cov_1.336683_g36809_i0 PRJNA744060 37138 272 1.336683 3.63577776 Vicinamibacteria bacterium 2793154 Bacteria Bacteria 113 1.13e-20   NTclustered gi|2913438576|emb|OZ223985.1| 2793154 g36809 i0 82.443 0.481617647058824 131 21 48 2 9 138 993909 994038 MAG: Vicinamibacteria bacterium isolate c1004ee9-65a7-452c-baee-c28c3200ebb6 genome assembly, chromosome: 1 blastn 131 113 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria       Vicinamibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;