RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA743294" and tax_phylum = "Xenacoelomorpha"

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tax_superkingdom 1

tax_phylum 1

  • Xenacoelomorpha · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA743294 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17300088 17300088 PRJNA743294_P_NODE_19834_length_364_cov_4.092784_g19378_i0 PRJNA743294 19834 364 4.092784 14.89773376 Symsagittifera roscoffensis 84072 Xenacoelomorpha other_Eukaryota 52.8 0.035   NTclustered gi|2701350931|ref|XM_063860909.1| 84072 g19378 i0 100 0.230769230769231 28 0 8 0 1 28 1468 1441 PREDICTED: Symsagittifera roscoffensis uncharacterized LOC134844295 (LOC134844295), transcript variant X1, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Xenacoelomorpha   Acoela Sagittiferidae Symsagittifera Symsagittifera roscoffensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;