contig_metadata
24 rows where analysis = "blastn", bioproject = "PRJNA743294" and tax_phylum = "Tubulinea"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 722192 | 722192 | PRJNA743294_P_NODE_57221_length_239_cov_3.192771_g56765_i0 | PRJNA743294 | 57221 | 239 | 3.192771 | 7.63072269 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 333 | 6.849999999999999e-87 | NTclustered | gi|62766450|gb|AY924415.1| | 5778 | g56765 | i0 | 92.641 | 3.64853556485356 | 231 | 17 | 97 | 0 | 9 | 239 | 32 | 262 | Hartmannella vermiformis glycosyl hydrolase mRNA, partial cds | blastn | 872 | 333 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 3273617 | 3273617 | PRJNA743294_P_NODE_9463_length_512_cov_4.715262_g9007_i0 | PRJNA743294 | 9463 | 512 | 4.715262 | 24.14214144 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 708 | 0 | NTclustered | gi|62910949|gb|AY925001.1| | 5778 | g9007 | i0 | 96.495 | 1.90234375 | 428 | 15 | 84 | 0 | 85 | 512 | 1 | 428 | Hartmannella vermiformis Rpl7A mRNA, partial cds | blastn | 974 | 708 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 4550518 | 4550518 | PRJNA743294_P_NODE_29564_length_306_cov_1.120172_g29108_i0 | PRJNA743294 | 29564 | 306 | 1.120172 | 3.42772632 | Copromyxa flindersi | 3050410 | Tubulinea | other_Eukaryota | 555 | 1.7799999999999996e-153 | NTclustered | gi|2513086415|gb|OR081327.1| | 3050410 | g29108 | i0 | 99.346 | 54.875816993464 | 306 | 2 | 100 | 0 | 1 | 306 | 1525 | 1220 | Copromyxa flindersi strain KI4.1.H5.3 small subunit ribosomal RNA gene, partial sequence | blastn | 16792 | 555 | 1 | Eukaryota | Amoebozoa | Tubulinea | Elardia | Euamoebida | Hartmannellidae | Copromyxa | Copromyxa flindersi | ||
| 7100761 | 7100761 | PRJNA743294_P_NODE_35366_length_283_cov_2.114286_g34910_i0 | PRJNA743294 | 35366 | 283 | 2.114286 | 5.98342938 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 329 | 1.0799999999999998e-85 | NTclustered | gi|88601161|gb|DQ384328.1| | 5778 | g34910 | i0 | 87.633 | 4 | 283 | 35 | 100 | 0 | 1 | 283 | 253 | 535 | Hartmannella vermiformis glycosyl hydrolase A mRNA, partial cds | blastn | 1132 | 329 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 8375357 | 8375357 | PRJNA743294_P_NODE_32727_length_292_cov_2.986301_g32271_i0 | PRJNA743294 | 32727 | 292 | 2.986301 | 8.71999892 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 429 | 1.07e-115 | NTclustered | gi|146335208|gb|EF216680.1| | 5778 | g32271 | i0 | 93.993 | 0.969178082191781 | 283 | 17 | 97 | 0 | 10 | 292 | 276 | 558 | Hartmannella vermiformis transketolase mRNA, complete cds | blastn | 283 | 429 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 8375578 | 8375578 | PRJNA743294_P_NODE_6527_length_609_cov_1.494403_g6076_i0 | PRJNA743294 | 6527 | 609 | 1.494403 | 9.10091427 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 590 | 1.0299999999999997e-163 | NTclustered | gi|61968704|gb|AY803784.1| | 5778 | g6076 | i0 | 94.892 | 6.76518883415435 | 372 | 19 | 61 | 0 | 29 | 400 | 372 | 1 | Hartmannella vermiformis vacuolar protein sorting protein 26 (vps26) gene, partial cds | blastn | 4120 | 590 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 9650403 | 9650403 | PRJNA743294_P_NODE_21488_length_352_cov_1.326165_g21032_i0 | PRJNA743294 | 21488 | 352 | 1.326165 | 4.6681008 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 272 | 2.35e-68 | NTclustered | gi|327179545|gb|HM104303.1| | 5778 | g21032 | i0 | 88.158 | 0.786931818181818 | 228 | 27 | 65 | 0 | 107 | 334 | 1080 | 1307 | Hartmannella vermiformis isolate CDC-19 glucosamine-6-phosphate isomerase (GPI) gene, partial cds | blastn | 277 | 272 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 9650700 | 9650700 | PRJNA743294_P_NODE_7088_length_587_cov_1.042802_g6636_i0 | PRJNA743294 | 7088 | 587 | 1.042802 | 6.12124774 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 721 | 0 | NTclustered | gi|89148143|gb|DQ388525.1| | 5778 | g6636 | i0 | 88.889 | 0.996592844974446 | 585 | 65 | 99 | 0 | 3 | 587 | 2602 | 3186 | Hartmannella vermiformis mitochondrial single-subunit RNA polymerase (mtRNAP) gene, complete cds; nuclear gene for mitochondrial product | blastn | 585 | 721 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 10926112 | 10926112 | PRJNA743294_P_NODE_49689_length_249_cov_0.886364_g49233_i0 | PRJNA743294 | 49689 | 249 | 0.886364 | 2.20704636 | Copromyxa protea | 931554 | Tubulinea | other_Eukaryota | 209 | 1.26e-49 | NTclustered | gi|1042160949|dbj|LC102281.1| | 931554 | g49233 | i0 | 87.097 | 86.1606425702811 | 186 | 22 | 74 | 2 | 65 | 249 | 731 | 547 | Copromyxa protea gene for elongation factor 2 alpha, partial cds, strain: LUM | blastn | 21454 | 209 | 1 | Eukaryota | Amoebozoa | Tubulinea | Elardia | Euamoebida | Hartmannellidae | Copromyxa | Copromyxa protea | ||
| 13475773 | 13475773 | PRJNA743294_P_NODE_17811_length_382_cov_4.009709_g17355_i0 | PRJNA743294 | 17811 | 382 | 4.009709 | 15.31708838 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 538 | 2.2899999999999998e-148 | NTclustered | gi|292559443|ref|NC_013986.1| | 5778 | g17355 | i0 | 92.188 | 67.3743455497382 | 384 | 24 | 100 | 3 | 1 | 382 | 20545 | 20166 | Hartmannella vermiformis mitochondrion, complete genome | blastn | 25737 | 538 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 13476003 | 13476003 | PRJNA743294_P_NODE_47491_length_251_cov_12.674157_g47035_i0 | PRJNA743294 | 47491 | 251 | 12.674157 | 31.81213407 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 416 | 6.999999999999998e-112 | NTclustered | gi|62910949|gb|AY925001.1| | 5778 | g47035 | i0 | 96.787 | 4.49402390438247 | 249 | 8 | 99 | 0 | 1 | 249 | 746 | 498 | Hartmannella vermiformis Rpl7A mRNA, partial cds | blastn | 1128 | 416 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 16024450 | 16024450 | PRJNA743294_P_NODE_12433_length_451_cov_58.997354_g11977_i0 | PRJNA743294 | 12433 | 451 | 58.997354 | 266.07806654 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 784 | 0 | NTclustered | gi|300078496|gb|GU001158.1| | 5778 | g11977 | i0 | 98.004 | 24.0487804878049 | 451 | 9 | 100 | 0 | 1 | 451 | 1660 | 1210 | Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence | blastn | 10846 | 784 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 16024624 | 16024624 | PRJNA743294_P_NODE_33293_length_290_cov_2.465438_g32837_i0 | PRJNA743294 | 33293 | 290 | 2.465438 | 7.1497702 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 381 | 3.0199999999999987e-101 | NTclustered | gi|909719645|gb|KT185625.1| | 5778 | g32837 | i0 | 90.378 | 1.00344827586207 | 291 | 26 | 99 | 2 | 2 | 290 | 938 | 648 | Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence | blastn | 291 | 381 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 17300211 | 17300211 | PRJNA743294_P_NODE_36014_length_281_cov_1.644231_g35558_i0 | PRJNA743294 | 36014 | 281 | 1.644231 | 4.62028911 | Hartmannella cantabrigiensis | 239731 | Tubulinea | other_Eukaryota | 176 | 1.47e-39 | NTclustered | gi|33304360|gb|AY293972.1| | 239731 | g35558 | i0 | 93.966 | 3.23131672597865 | 116 | 7 | 80 | 0 | 164 | 279 | 1797 | 1912 | Hartmannella cantabrigiensis clone 15 dihydrofolate reductase (DHFR) gene, complete cds; and thymidylate synthase (TS) gene, partial cds | blastn | 908 | 176 | 1 | Eukaryota | Amoebozoa | Tubulinea | Elardia | Euamoebida | Hartmannellidae | Hartmannella | Hartmannella cantabrigiensis | ||
| 17300410 | 17300410 | PRJNA743294_P_NODE_914_length_1358_cov_2.765759_g750_i0 | PRJNA743294 | 914 | 1358 | 2.765759 | 37.55900722 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 1629 | 0 | NTclustered | gi|66270666|gb|AY950658.1| | 5778 | g750 | i0 | 92.806 | 1.18114874815906 | 1126 | 79 | 83 | 1 | 223 | 1346 | 1128 | 3 | Hartmannella vermiformis Nop58p mRNA, partial cds | blastn | 1604 | 1629 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 18573607 | 18573607 | PRJNA743294_P_NODE_13215_length_439_cov_3.122951_g12759_i0 | PRJNA743294 | 13215 | 439 | 3.122951 | 13.70975489 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 475 | 2.1199999999999998e-129 | NTclustered | gi|88601207|gb|DQ384272.1| | 5778 | g12759 | i0 | 92.705 | 0.876993166287016 | 329 | 24 | 75 | 0 | 111 | 439 | 357 | 29 | Hartmannella vermiformis unknown mRNA | blastn | 385 | 475 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 18573702 | 18573702 | PRJNA743294_P_NODE_24275_length_333_cov_6.573077_g23819_i0 | PRJNA743294 | 24275 | 333 | 6.573077 | 21.88834641 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 494 | 4.34e-135 | NTclustered | gi|292559443|ref|NC_013986.1| | 5778 | g23819 | i0 | 93.413 | 109.966966966967 | 334 | 21 | 100 | 1 | 1 | 333 | 28267 | 27934 | Hartmannella vermiformis mitochondrion, complete genome | blastn | 36619 | 494 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 18573740 | 18573740 | PRJNA743294_P_NODE_3035_length_857_cov_14.468112_g2677_i0 | PRJNA743294 | 3035 | 857 | 14.468112 | 123.99171984 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 1245 | 0 | NTclustered | gi|909719645|gb|KT185625.1| | 5778 | g2677 | i0 | 92.816 | 10.730455075846 | 863 | 56 | 100 | 4 | 1 | 857 | 1063 | 201 | Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence | blastn | 9196 | 1245 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 18573813 | 18573813 | PRJNA743294_P_NODE_40955_length_266_cov_1.616580_g40499_i0 | PRJNA743294 | 40955 | 266 | 1.61658 | 4.3001028 | Hartmannella cantabrigiensis | 239731 | Tubulinea | other_Eukaryota | 233 | 8.089999999999999e-57 | NTclustered | gi|33304357|gb|AY293971.1| | 239731 | g40499 | i0 | 91.228 | 1.92857142857143 | 171 | 15 | 64 | 0 | 1 | 171 | 1900 | 2070 | Hartmannella cantabrigiensis clone 5 dihydrofolate reductase (DHFR) gene, complete cds; and thymidylate synthase (TS) gene, partial cds | blastn | 513 | 233 | 1 | Eukaryota | Amoebozoa | Tubulinea | Elardia | Euamoebida | Hartmannellidae | Hartmannella | Hartmannella cantabrigiensis | ||
| 18573917 | 18573917 | PRJNA743294_P_NODE_555_length_1567_cov_7.174029_g434_i0 | PRJNA743294 | 555 | 1567 | 7.174029 | 112.41703443 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 2163 | 0 | NTclustered | gi|146335208|gb|EF216680.1| | 5778 | g434 | i0 | 91.881 | 2.52265475430759 | 1552 | 120 | 99 | 6 | 19 | 1567 | 2088 | 540 | Hartmannella vermiformis transketolase mRNA, complete cds | blastn | 3953 | 2163 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 19848911 | 19848911 | PRJNA743294_P_NODE_1476_length_1159_cov_3.985267_g1239_i0 | PRJNA743294 | 1476 | 1159 | 3.985267 | 46.18924453 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 1439 | 0 | NTclustered | gi|423292048|gb|JQ519470.1| | 5778 | g1239 | i0 | 95.264 | 74.779119930975 | 908 | 43 | 78 | 0 | 247 | 1154 | 908 | 1 | Vermamoeba vermiformis clone JG10.132_b5 alpha tubulin gene, partial cds | blastn | 86669 | 1439 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 19848948 | 19848948 | PRJNA743294_P_NODE_18656_length_374_cov_5.232558_g18200_i0 | PRJNA743294 | 18656 | 374 | 5.232558 | 19.56976692 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 516 | 1.05e-141 | NTclustered | gi|292559443|ref|NC_013986.1| | 5778 | g18200 | i0 | 95.639 | 51.7593582887701 | 321 | 14 | 86 | 0 | 1 | 321 | 27358 | 27038 | Hartmannella vermiformis mitochondrion, complete genome | blastn | 19358 | 516 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 21124438 | 21124438 | PRJNA743294_P_NODE_117_length_2629_cov_8.457746_g84_i0 | PRJNA743294 | 117 | 2629 | 8.457746 | 222.35414234 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 1240 | 0 | NTclustered | gi|421976355|gb|JQ519494.1| | 5778 | g84 | i0 | 94.836 | 64.7352605553442 | 794 | 41 | 30 | 0 | 464 | 1257 | 1 | 794 | Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds | blastn | 170189 | 1240 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis | ||||
| 24948520 | 24948520 | PRJNA743294_P_NODE_31240_length_298_cov_2.586667_g30784_i0 | PRJNA743294 | 31240 | 298 | 2.586667 | 7.70826766 | Vermamoeba vermiformis | 5778 | Tubulinea | other_Eukaryota | 224 | 5.549999999999998e-54 | NTclustered | gi|292559443|ref|NC_013986.1| | 5778 | g30784 | i0 | 81.034 | 2.60402684563758 | 290 | 48 | 96 | 7 | 12 | 298 | 25864 | 25579 | Hartmannella vermiformis mitochondrion, complete genome | blastn | 776 | 224 | 1 | Eukaryota | Amoebozoa | Tubulinea | Echinamoebida | Vermamoeba | Vermamoeba vermiformis |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;