RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA743294" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA743294 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12677894 12677894 PRJNA743294_P_NODE_11450_length_469_cov_2.290404_g10994_i0 PRJNA743294 11450 469 2.290404 10.74199476 Borreliella 64895 Bacteria Bacteria 52.8 0.046   NTclustered gi|2537428790|gb|CP124054.1| 373540 g10994 i0 100 0.238805970149254 28 0 6 0 369 396 770587 770614 Borreliella lanei strain CA-28-91 chromosome, complete genome blastn 112 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella lanei
13475853 13475853 PRJNA743294_P_NODE_26931_length_318_cov_4.106122_g26475_i0 PRJNA743294 26931 318 4.106122 13.05746796 Spirochaetia bacterium 2053615 Bacteria Bacteria 250 9.85e-62   NTclustered gi|2891482181|emb|OZ219914.1| 2053615 g26475 i0 86.266 123.122641509434 233 29 73 3 88 318 854128 854359 MAG: Spirochaetia bacterium isolate 65460407-d738-4661-97af-02a88c6845d9 genome assembly, chromosome: 2 blastn 39153 250 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
23675151 23675151 PRJNA743294_P_NODE_48339_length_250_cov_6.745763_g47883_i0 PRJNA743294 48339 250 6.745763 16.8644075 Spirochaetia bacterium 2053615 Bacteria Bacteria 313 9.41e-81   NTclustered gi|2891482181|emb|OZ219914.1| 2053615 g47883 i0 91.667 118.256 228 16 91 2 23 250 856088 856312 MAG: Spirochaetia bacterium isolate 65460407-d738-4661-97af-02a88c6845d9 genome assembly, chromosome: 2 blastn 29564 313 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;