RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA743294" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA743294 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1997888 1997888 PRJNA743294_P_NODE_10762_length_483_cov_1.660976_g10306_i0 PRJNA743294 10762 483 1.660976 8.02251408 Ptychodera flava 63121 Hemichordata other_Eukaryota 86.1 4.64e-12   NTclustered gi|2875650366|ref|XM_070694069.1| 63121 g10306 i0 85.542 0.805383022774327 83 10 17 2 160 241 987 906 PREDICTED: Ptychodera flava NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like (LOC139128258), mRNA blastn 389 86.1 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
12201427 12201427 PRJNA743294_P_NODE_32310_length_294_cov_1.524887_g31854_i0 PRJNA743294 32310 294 1.524887 4.48316778 Ptychodera flava 63121 Hemichordata other_Eukaryota 119 2.65e-22   NTclustered gi|2875662552|ref|XM_070716183.1| 63121 g31854 i0 86.792 3.17687074829932 106 14 36 0 29 134 291 396 PREDICTED: Ptychodera flava dynein light chain 1, cytoplasmic (LOC139145192), mRNA blastn 934 119 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
13476064 13476064 PRJNA743294_P_NODE_54451_length_244_cov_0.912281_g53995_i0 PRJNA743294 54451 244 0.912281 2.22596564 Ptychodera flava 63121 Hemichordata other_Eukaryota 63.9 1.02e-5   NTclustered gi|2875749286|ref|XM_070704889.1| 63121 g53995 i0 89.796 6.4016393442623 49 5 20 0 36 84 2061 2013 PREDICTED: Ptychodera flava lisH domain-containing protein ARMC9-like (LOC139137004), transcript variant X4, mRNA blastn 1562 63.9 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
16024707 16024707 PRJNA743294_P_NODE_44093_length_258_cov_1.416216_g43637_i0 PRJNA743294 44093 258 1.416216 3.65383728 Ptychodera flava 63121 Hemichordata other_Eukaryota 185 2.2199999999999998e-42   NTclustered gi|2875715425|ref|XM_070688431.1| 63121 g43637 i0 80.498 2.78682170542636 241 47 93 0 1 241 737 977 PREDICTED: Ptychodera flava serine/threonine-protein phosphatase 2A catalytic subunit beta isoform (LOC139122748), mRNA blastn 719 185 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
16024762 16024762 PRJNA743294_P_NODE_50773_length_248_cov_0.891429_g50317_i0 PRJNA743294 50773 248 0.891429 2.21074392 Ptychodera flava 63121 Hemichordata other_Eukaryota 56.5 0.002   NTclustered gi|2875689507|ref|XM_070678005.1| 63121 g50317 i0 96.97 11.8911290322581 33 1 13 0 179 211 330 298 PREDICTED: Ptychodera flava uncharacterized protein (LOC139115699), transcript variant X1, mRNA blastn 2949 56.5 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;