RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA743294" and tax_phylum = "Candidatus Methylomirabilota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Methylomirabilota · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA743294 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1998228 1998228 PRJNA743294_P_NODE_58662_length_231_cov_4.113924_g58206_i0 PRJNA743294 58662 231 4.113924 9.50316444 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 366 6.49e-97   NTclustered gi|2874253892|emb|OY970067.1| 991135 g58206 i0 95.238 280.134199134199 231 11 100 0 1 231 4745623 4745853 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 64711 366 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
7100739 7100739 PRJNA743294_P_NODE_32886_length_292_cov_1.360731_g32430_i0 PRJNA743294 32886 292 1.360731 3.97333452 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 462 1.06e-125   NTclustered gi|2874253892|emb|OY970067.1| 991135 g32430 i0 95.205 159.66095890411 292 14 100 0 1 292 4747152 4746861 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 46621 462 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
7100919 7100919 PRJNA743294_P_NODE_57366_length_238_cov_4.472727_g56910_i0 PRJNA743294 57366 238 4.472727 10.64509026 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 390 3.99e-104   NTclustered gi|2874253892|emb|OY970067.1| 991135 g56910 i0 96.218 279.004201680672 238 9 100 0 1 238 4746427 4746190 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 66403 390 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
18573943 18573943 PRJNA743294_P_NODE_60595_length_205_cov_6.234848_g60139_i0 PRJNA743294 60595 205 6.234848 12.7814384 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 346 7.33e-91   NTclustered gi|2874253892|emb|OY970067.1| 991135 g60139 i0 97.073 248.89756097561 205 6 100 0 1 205 4746207 4746003 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 51024 346 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
19849050 19849050 PRJNA743294_P_NODE_33256_length_290_cov_3.230415_g32800_i0 PRJNA743294 33256 290 3.230415 9.3682035 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 375 1.4e-99   NTclustered gi|2874253892|emb|OY970067.1| 991135 g32800 i0 90.278 91.8551724137931 288 27 99 1 1 288 4745274 4745560 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 26638 375 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;