RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA743294" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA743294 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5825757 5825757 PRJNA743294_P_NODE_51325_length_247_cov_1.649425_g50869_i0 PRJNA743294 51325 247 1.649425 4.07407975 Thermus scotoductus 37636 Bacteria Bacteria 457 4.05e-124   NTclustered gi|320149275|gb|CP001962.1| 743525 g50869 i0 100 31.1133603238866 247 0 100 0 1 247 994053 994299 Thermus scotoductus SA-01, complete genome blastn 7685 457 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
20324781 20324781 PRJNA743294_P_NODE_46156_length_253_cov_1.422222_g45700_i0 PRJNA743294 46156 253 1.422222 3.59822166 Deinococcus 1298 Bacteria Bacteria 335 2.0399999999999993e-87   NTclustered gi|485099143|ref|NR_102538.1| 432329 g45700 i0 90.514 241.529644268775 253 24 100 0 1 253 1878 1626 Deinococcus peraridilitoris strain KR-200 23S ribosomal RNA gene, complete sequence blastn 61107 335 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;