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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA743294" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 14 ✖

bioproject 1

  • PRJNA743294 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1198312 1198312 PRJNA743294_P_NODE_32361_length_294_cov_1.294118_g31905_i0 PRJNA743294 32361 294 1.294118 3.80470692 Fusobacterium 848 Bacteria Bacteria 54.7 0.008   NTclustered gi|2704983719|gb|CP077132.1| 851 g31905 i0 100 2.17006802721088 29 0 10 0 28 56 841641 841669 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 638 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
2473759 2473759 PRJNA743294_P_NODE_58762_length_231_cov_2.481013_g58306_i0 PRJNA743294 58762 231 2.481013 5.73114003 root 1 Root_unresolved Root_unresolved 427 2.9399999999999998e-115   NTclustered gi|1973571794|gb|MW567136.1| 851 g58306 i0 100 108 231 0 100 0 1 231 697 467 Fusobacterium nucleatum strain c15Ua_6_AN 16S ribosomal RNA gene, partial sequence blastn 24948 427 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
4550502 4550502 PRJNA743294_P_NODE_26864_length_319_cov_1.508130_g26408_i0 PRJNA743294 26864 319 1.50813 4.8109347 Fusobacterium nucleatum 851 Bacteria Bacteria 540 5.24e-149   NTclustered gi|2704936415|gb|CP077184.1| 851 g26408 i0 97.179 498.012539184953 319 9 100 0 1 319 64303 63985 Fusobacterium nucleatum strain SB030 chromosome, complete genome blastn 158866 540 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
7576305 7576305 PRJNA743294_P_NODE_58506_length_232_cov_3.245283_g58050_i0 PRJNA743294 58506 232 3.245283 7.52905656 Fusobacterium 848 Bacteria Bacteria 429 8.2e-116   NTclustered gi|15028908|emb|AJ307974.1| 851 g58050 i0 100 467.943965517241 232 0 100 0 1 232 25 256 Fusobacterium nucleatum 23S rRNA gene, strain DSM 20482 blastn 108563 429 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
9650478 9650478 PRJNA743294_P_NODE_30768_length_300_cov_3.000000_g30312_i0 PRJNA743294 30768 300 3 9 Fusobacterium varium 856 Bacteria Bacteria 52.8 0.028   NTclustered gi|1243298346|dbj|AP017968.1| 856 g30312 i0 100 0.0933333333333333 28 0 9 0 267 294 1769356 1769383 Fusobacterium varium Fv113-g1 DNA, complete genome blastn 28 52.8 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium varium
11402052 11402052 PRJNA743294_P_NODE_34029_length_288_cov_1.293023_g33573_i0 PRJNA743294 34029 288 1.293023 3.72390624 Bacteria 2 Bacteria Bacteria 520 6.079999999999999e-143   NTclustered gi|285798275|gb|GU408257.1| 851 g33573 i0 99.303 131.638888888889 287 2 99 0 2 288 293 7 Fusobacterium nucleatum clone OEN061 16S ribosomal RNA gene, partial sequence blastn 37912 525 0.990476190476191 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
11402077 11402077 PRJNA743294_P_NODE_47169_length_252_cov_0.871508_g46713_i0 PRJNA743294 47169 252 0.871508 2.19620016 Fusobacterium 848 Bacteria Bacteria 466 6.89e-127   NTclustered gi|2706064790|gb|CP077192.1| 76859 g46713 i0 100 39.0198412698413 252 0 100 0 1 252 1381942 1382193 Fusobacterium animalis strain SB024 chromosome, complete genome blastn 9833 466 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
11402098 11402098 PRJNA743294_P_NODE_56329_length_242_cov_0.923077_g55873_i0 PRJNA743294 56329 242 0.923077 2.23384634 Fusobacterium 848 Bacteria Bacteria 364 2.4699999999999992e-96   NTclustered gi|1370537877|gb|CP028108.1| 860 g55873 i0 93.802 11.9173553719008 242 15 100 0 1 242 877125 876884 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 2884 364 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
12677928 12677928 PRJNA743294_P_NODE_34530_length_286_cov_1.483568_g34074_i0 PRJNA743294 34530 286 1.483568 4.24300448 Fusobacterium 848 Bacteria Bacteria 529 1e-145   NTclustered gi|2078814929|gb|CP071093.1| 155615 g34074 i0 100 482.265734265734 286 0 100 0 1 286 276790 277075 Fusobacterium vincentii strain THCT14A3 chromosome, complete genome blastn 137928 529 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium vincentii
15226907 15226907 PRJNA743294_P_NODE_54012_length_244_cov_2.116959_g53556_i0 PRJNA743294 54012 244 2.116959 5.16537996 Fusobacterium 848 Bacteria Bacteria 451 1.86e-122   NTclustered gi|1370537877|gb|CP028108.1| 860 g53556 i0 100 488.016393442623 244 0 100 0 1 244 462634 462877 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 119076 451 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
19050087 19050087 PRJNA743294_P_NODE_38135_length_274_cov_2.094527_g37679_i0 PRJNA743294 38135 274 2.094527 5.73900398 Fusobacterium 848 Bacteria Bacteria 507 4.47e-139   NTclustered gi|2446175567|gb|CP117964.1| 851 g37679 i0 100 490.56204379562 274 0 100 0 1 274 2087402 2087675 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 134414 507 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
20324805 20324805 PRJNA743294_P_NODE_54956_length_243_cov_2.294118_g54500_i0 PRJNA743294 54956 243 2.294118 5.57470674 Cetobacterium 180162 Bacteria Bacteria 433 6.69e-117   NTclustered gi|2865368125|gb|CP122294.1| 188913 g54500 i0 98.77 525.222222222222 244 2 100 1 1 243 278887 279130 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 127629 433 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
23674947 23674947 PRJNA743294_P_NODE_20979_length_356_cov_0.819788_g20523_i0 PRJNA743294 20979 356 0.819788 2.91844528 Leptotrichia buccalis 40542 Bacteria Bacteria 586 7.469999999999998e-163   NTclustered gi|257048753|gb|CP001685.1| 523794 g20523 i0 96.348 278.084269662921 356 13 100 0 1 356 266089 265734 Leptotrichia buccalis DSM 1135, complete genome blastn 98998 586 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis
25424932 25424932 PRJNA743294_P_NODE_37780_length_275_cov_2.440594_g37324_i0 PRJNA743294 37780 275 2.440594 6.7116335 Leptotrichia 32067 Bacteria Bacteria 508 1.2499999999999999e-139   NTclustered gi|470484715|ref|NR_076664.1| 40542 g37324 i0 100 461.309090909091 275 0 100 0 1 275 1968 2242 Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence blastn 126860 508 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia buccalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;