RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA743294" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA743294 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8375258 8375258 PRJNA743294_P_NODE_1907_length_1041_cov_5.605372_g1634_i0 PRJNA743294 1907 1041 5.605372 58.35192252 Thecamonas trahens 529818 Root_unresolved Root_unresolved 405 7.04e-108   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g1634 i0 76.492 16.4197886647454 821 147 77 32 152 949 997 200 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 17093 405 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
8375312 8375312 PRJNA743294_P_NODE_26447_length_321_cov_1.798387_g25991_i0 PRJNA743294 26447 321 1.798387 5.77282227 Thecamonas trahens 529818 Root_unresolved Root_unresolved 174 6.16e-39   NTclustered gi|923131752|ref|XM_013903888.1| 461836 g25991 i0 81.776 17.9563862928349 214 33 66 4 82 292 517 307 Thecamonas trahens ATCC 50062 60S ribosomal protein (AMSG_04094), mRNA blastn 5764 174 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
9650491 9650491 PRJNA743294_P_NODE_328_length_1916_cov_5.810635_g250_i0 PRJNA743294 328 1916 5.810635 111.3317666 Thecamonas trahens 529818 Root_unresolved Root_unresolved 872 0   NTclustered gi|923137248|ref|XM_013906635.1| 461836 g250 i0 78.333 52.4926931106472 1380 278 72 19 400 1770 1877 510 Thecamonas trahens ATCC 50062 inositol-3-phosphate synthase (AMSG_00912), mRNA blastn 100576 872 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
13475968 13475968 PRJNA743294_P_NODE_42791_length_261_cov_1.872340_g42335_i0 PRJNA743294 42791 261 1.87234 4.8868074 Thecamonas trahens 529818 Root_unresolved Root_unresolved 67.6 8.5e-7   NTclustered gi|923122628|ref|XM_013899330.1| 461836 g42335 i0 93.478 0.176245210727969 46 2 18 1 21 66 2524 2568 Thecamonas trahens ATCC 50062 major vault protein (AMSG_09422), mRNA blastn 46 67.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
23675086 23675086 PRJNA743294_P_NODE_38319_length_274_cov_1.144279_g37863_i0 PRJNA743294 38319 274 1.144279 3.13532446 Singekia franciliensis 2925418 Root_unresolved Root_unresolved 468 2.11e-127   NTclustered gi|2206682165|gb|OM966638.1| 2925418 g37863 i0 97.445 42.014598540146 274 7 100 0 1 274 3565 3838 Singekia franciliensis strain ORSAYFEB19APU1 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11512 468 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Singekia Singekia franciliensis
24948608 24948608 PRJNA743294_P_NODE_45520_length_254_cov_2.906077_g45064_i0 PRJNA743294 45520 254 2.906077 7.38143558 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 219 2.1499999999999998e-52   NTclustered gi|116222168|gb|DQ980460.1| 41120 g45064 i0 82.879 101.358267716535 257 31 99 11 3 254 517 269 Apusomonas proboscidea clone aphsp90 Hsp90 mRNA, partial cds blastn 25745 219 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;