RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA741997 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1198160 1198160 PRJNA741997_P_NODE_85161_length_244_cov_0.888889_g84041_i0 PRJNA741997 85161 244 0.888889 2.16888916 Nitratidesulfovibrio 2802295 Bacteria Bacteria 300 7.12e-77   NTclustered gi|470474459|ref|NR_076217.1| 881 g84041 i0 89.069 180.549180327869 247 20 100 6 1 244 1390 1148 Desulfovibrio vulgaris strain Hildenborough 23S ribosomal RNA gene, complete sequence blastn 44054 300 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Nitratidesulfovibrio Nitratidesulfovibrio vulgaris
4549878 4549878 PRJNA741997_P_NODE_24964_length_447_cov_1.307487_g23844_i0 PRJNA741997 24964 447 1.307487 5.84446689 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 54.7 0.012   NTclustered gi|2621705002|emb|OY762289.1| 2049043 g23844 i0 100 0.0648769574944072 29 0 6 0 224 252 185351 185379 MAG: Desulfovibrionaceae bacterium isolate 1e2121d5-5174-4668-bae3-9852897706ae genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
24948014 24948014 PRJNA741997_P_NODE_56460_length_286_cov_1.084507_g55340_i0 PRJNA741997 56460 286 1.084507 3.10169002 Desulfarculus baarsii 453230 Bacteria Bacteria 228 4.0899999999999984e-55   NTclustered gi|301638057|gb|CP002085.1| 644282 g55340 i0 82.745 41.8461538461538 255 44 89 0 32 286 903190 903444 Desulfarculus baarsii DSM 2075, complete genome blastn 11968 228 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfarculus Desulfarculus baarsii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;