RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA741997 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12200844 12200844 PRJNA741997_P_NODE_39570_length_345_cov_1.132353_g38450_i0 PRJNA741997 39570 345 1.132353 3.90661785 Rhodothermus marinus 29549 Bacteria Bacteria 56.5 0.003   NTclustered gi|2844596544|gb|CP172416.1| 29549 g38450 i0 89.362 0.217391304347826 47 2 14 3 202 248 2949298 2949255 Rhodothermus marinus strain ISCAR-493 chromosome blastn 75 56.5 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
19049906 19049906 PRJNA741997_P_NODE_74735_length_249_cov_2.585227_g73615_i0 PRJNA741997 74735 249 2.585227 6.43721523 FCB group 1783270 Bacteria Bacteria 52.8 0.023   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g73615 i0 100 0.337349397590361 28 0 11 0 63 90 1275324 1275297 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 84 52.8 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
23674350 23674350 PRJNA741997_P_NODE_19439_length_523_cov_1.675556_g18324_i0 PRJNA741997 19439 523 1.675556 8.76315788 Rhodothermales bacterium 2306054 Bacteria Bacteria 63.9 2.37e-5   NTclustered gi|2518540634|emb|OX638295.1| 2306054 g18324 i0 97.297 0.141491395793499 37 1 7 0 266 302 664841 664877 MAG: Rhodothermales bacterium isolate 379627e8-994f-481d-907a-dd5b185e1f88 genome assembly, chromosome: 1 blastn 74 63.9 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;