RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA741997 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12677697 12677697 PRJNA741997_P_NODE_26570_length_429_cov_2.800562_g25450_i0 PRJNA741997 26570 429 2.800562 12.01441098 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 268 3.7699999999999996e-67   NTclustered gi|294891115|ref|XM_002773382.1| 423536 g25450 i0 82.334 78.6899766899767 317 48 73 8 21 333 387 75 Perkinsus marinus ATCC 50983 ribosomal protein S23, putative, mRNA blastn 33758 270 0.992592592592593 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
22398944 22398944 PRJNA741997_P_NODE_46198_length_319_cov_1.252033_g45078_i0 PRJNA741997 46198 319 1.252033 3.99398527 Perkinsus marinus 31276 SAR_Eukaryotes SAR_Eukaryotes 58.4 6.43e-4   NTclustered gi|294947402|ref|XM_002785320.1| 423536 g45078 i0 89.13 0.144200626959248 46 5 14 0 67 112 228 273 Perkinsus marinus ATCC 50983 high mobility group protein, putative, mRNA blastn 46 58.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;