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contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA741997 · 17 ✖

analysis 1

  • blastn · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1997416 1997416 PRJNA741997_P_NODE_30722_length_394_cov_5.003115_g29602_i0 PRJNA741997 30722 394 5.003115 19.7122731 Strongyloides papillosus 174720 Nematoda Nematoda 254 9.63e-63   NTclustered gi|687022713|emb|LM525627.1| 174720 g29602 i0 78.811 89.2335025380711 387 74 97 5 7 389 62408 62790 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000036 blastn 35158 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
1997635 1997635 PRJNA741997_P_NODE_67582_length_260_cov_1.647059_g66462_i0 PRJNA741997 67582 260 1.647059 4.2823534 Trichostrongylus vitrinus 40352 Nematoda Nematoda 193 1.34e-44   NTclustered gi|71057506|emb|AM050349.1| 40352 g66462 i0 84.817 3.50384615384615 191 29 73 0 1 191 55 245 Trichostrongylus vitrinus partial ORF for putative ATP synthase blastn 911 193 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Trichostrongylus Trichostrongylus vitrinus
4549910 4549910 PRJNA741997_P_NODE_30564_length_396_cov_0.953560_g29444_i0 PRJNA741997 30564 396 0.95356 3.7760976 Necator americanus 51031 Nematoda Nematoda 58.4 8.15e-4   NTclustered gi|2707617768|ref|XM_064212650.1| 51031 g29444 i0 100 0.234848484848485 31 0 8 0 162 192 2940 2970 Necator americanus uncharacterized protein (RB195_024762), partial mRNA blastn 93 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Necator Necator americanus
5824969 5824969 PRJNA741997_P_NODE_25905_length_436_cov_15.911846_g24785_i0 PRJNA741997 25905 436 15.911846 69.37564856 Pristionchus pauli 376545 Nematoda Nematoda 298 4.9e-76   NTclustered gi|150982019|gb|EF634598.1| 376545 g24785 i0 81.768 5.1743119266055 362 60 82 6 70 428 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 298 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
7099990 7099990 PRJNA741997_P_NODE_14506_length_633_cov_1.848214_g13414_i0 PRJNA741997 14506 633 1.848214 11.69919462 Strongyloides ratti 34506 Nematoda Nematoda 377 9.13e-100   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g13414 i0 86.765 162.668246445498 340 43 54 2 293 631 675 337 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 102969 377 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
7100335 7100335 PRJNA741997_P_NODE_72666_length_251_cov_0.865169_g71546_i0 PRJNA741997 72666 251 0.865169 2.17157419 Caenorhabditis remanei 31234 Nematoda Nematoda 169 2.1599999999999996e-37   NTclustered gi|308452822|ref|XM_003089146.1| 31234 g71546 i0 85.714 17.0239043824701 161 21 64 2 91 250 95 254 Caenorhabditis remanei uncharacterized protein (GCK72_014297), partial mRNA blastn 4273 169 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
8375047 8375047 PRJNA741997_P_NODE_86047_length_243_cov_0.905882_g84927_i0 PRJNA741997 86047 243 0.905882 2.20129326 Strongyloides papillosus 174720 Nematoda Nematoda 161 3.4899999999999997e-35   NTclustered gi|687022666|emb|LM525580.1| 174720 g84927 i0 78.862 32.238683127572 246 46 100 6 1 243 237400 237158 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000007 blastn 7834 161 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
9649927 9649927 PRJNA741997_P_NODE_42168_length_334_cov_2.655172_g41048_i0 PRJNA741997 42168 334 2.655172 8.86827448 Pristionchus maupasi 335527 Nematoda Nematoda 174 6.44e-39   NTclustered gi|150981849|gb|EF634494.1| 335527 g41048 i0 78.082 35.7125748502994 292 52 86 12 46 331 41 326 Pristionchus maupasi large subunit ribosomal protein 1 (rpl-1) mRNA, partial cds blastn 11928 174 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus maupasi
14750540 14750540 PRJNA741997_P_NODE_67012_length_261_cov_3.792553_g65892_i0 PRJNA741997 67012 261 3.792553 9.89856333 Caenorhabditis briggsae 6238 Nematoda Nematoda 97.1 1.08e-15   NTclustered gi|268531145|ref|XM_002630653.1| 6238 g65892 i0 87.805 2.33716475095785 82 10 31 0 172 253 86 167 Caenorhabditis briggsae Protein CBR-PRDX-2 (Cbr-prdx-2), partial mRNA blastn 610 97.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
16023942 16023942 PRJNA741997_P_NODE_26653_length_428_cov_9.371831_g25533_i0 PRJNA741997 26653 428 9.371831 40.11143668 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.4100000000000001e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g25533 i0 81.166 31.1635514018692 223 28 50 11 76 291 49 264 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
16024024 16024024 PRJNA741997_P_NODE_39453_length_345_cov_2.386029_g38333_i0 PRJNA741997 39453 345 2.386029 8.23180005 Strongyloides ratti 34506 Nematoda Nematoda 206 2.3699999999999998e-48   NTclustered gi|1376144539|ref|XM_024652732.1| 34506 g38333 i0 80.364 20.1014492753623 275 50 79 4 73 345 81 353 Strongyloides ratti 40S ribosomal protein S14 (SRAE_2000174400), partial mRNA blastn 6935 206 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
17775929 17775929 PRJNA741997_P_NODE_80634_length_246_cov_0.890173_g79514_i0 PRJNA741997 80634 246 0.890173 2.18982558 Rhabditida 6236 Nematoda Nematoda 250 7.34e-62   NTclustered gi|38491404|gb|AY372758.1| 27828 g79514 i0 84.959 96.4390243902439 246 37 100 0 1 246 41 286 Cooperia oncophora actin mRNA, complete cds blastn 23724 250 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
21124176 21124176 PRJNA741997_P_NODE_68737_length_258_cov_0.989189_g67617_i0 PRJNA741997 68737 258 0.989189 2.55210762 Caenorhabditis remanei 31234 Nematoda Nematoda 93.5 1.38e-14   NTclustered gi|2445365113|ref|XM_003113331.2| 31234 g67617 i0 78.986 22.0542635658915 138 27 53 2 4 140 581 445 Caenorhabditis remanei uncharacterized protein (GCK72_009749), partial mRNA blastn 5690 93.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
23674397 23674397 PRJNA741997_P_NODE_26419_length_431_cov_1.357542_g25299_i0 PRJNA741997 26419 431 1.357542 5.85100602 Strongyloides papillosus 174720 Nematoda Nematoda 372 2.8099999999999995e-98   NTclustered gi|687022644|emb|LM525558.1| 174720 g25299 i0 82.857 55.8607888631091 420 66 97 6 7 423 232302 232718 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 24076 372 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
23674464 23674464 PRJNA741997_P_NODE_35039_length_367_cov_1.323129_g33919_i0 PRJNA741997 35039 367 1.323129 4.8558834299999996 Caenorhabditis briggsae 6238 Nematoda Nematoda 254 8.9e-63   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g33919 i0 82.414 59.4359673024523 290 51 79 0 78 367 58 347 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 21813 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
23674586 23674586 PRJNA741997_P_NODE_61019_length_275_cov_2.569307_g59899_i0 PRJNA741997 61019 275 2.569307 7.06559425 Tylopharynx sp. WEM-2009 669147 Nematoda Nematoda 278 3.83e-70   NTclustered gi|256709136|gb|GQ422220.1| 669147 g59899 i0 86.853 10.2 251 29 91 4 3 251 499 747 Tylopharynx sp. WEM-2009 large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 2805 278 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylopharyngidae Tylopharynx Tylopharynx sp. WEM-2009
24149756 24149756 PRJNA741997_P_NODE_41159_length_338_cov_2.784906_g40039_i0 PRJNA741997 41159 338 2.784906 9.41298228 Opisthokonta 33154 Nematoda Nematoda 217 1.07e-51   NTclustered gi|687022644|emb|LM525558.1| 174720 g40039 i0 86.979 100.041420118343 192 25 57 0 147 338 390720 390529 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000004 blastn 33814 219 0.990867579908676 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;