RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA741997 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3273063 3273063 PRJNA741997_P_NODE_84683_length_244_cov_0.900585_g83563_i0 PRJNA741997 84683 244 0.900585 2.1974274 Metamycoplasma alkalescens 45363 Bacteria Bacteria 435 1.87e-117   NTclustered gi|1450418660|emb|LS991949.1| 45363 g83563 i0 98.77 3.00819672131148 244 3 100 0 1 244 458813 458570 Mycoplasma alkalescens strain NCTC10135 genome assembly, chromosome: 1 blastn 734 435 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma alkalescens
15226681 15226681 PRJNA741997_P_NODE_30772_length_394_cov_1.728972_g29652_i0 PRJNA741997 30772 394 1.728972 6.81214968 Mycoplasma 2093 Bacteria Bacteria 723 0   NTclustered gi|2294785939|gb|CP103424.1| 51364 g29652 i0 99.746 192.994923857868 394 1 100 0 1 394 269652 270045 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 76040 728 0.993131868131868 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;