RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA741997 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
721468 721468 PRJNA741997_P_NODE_42961_length_331_cov_1.306202_g41841_i0 PRJNA741997 42961 331 1.306202 4.32352862 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 99 3.95e-16   NTclustered gi|2874254163|emb|OY970395.1| 412054 g41841 i0 84.314 0.308157099697885 102 14 31 2 175 275 2484682 2484582 MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 blastn 102 99 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
8375024 8375024 PRJNA741997_P_NODE_80187_length_246_cov_1.751445_g79067_i0 PRJNA741997 80187 246 1.751445 4.3085547 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 124 4.64e-24   NTclustered gi|2874253755|emb|OY969695.1| 412054 g79067 i0 86.726 41.2642276422764 113 13 46 2 132 243 257296 257407 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 10151 124 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
9649949 9649949 PRJNA741997_P_NODE_45148_length_323_cov_1.156000_g44028_i0 PRJNA741997 45148 323 1.156 3.73388 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 56.5 0.002   NTclustered gi|2874253995|emb|OY970320.1| 246130 g44028 i0 94.595 0.114551083591331 37 1 11 1 89 125 1815626 1815591 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 37 56.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;