RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA741997 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3273046 3273046 PRJNA741997_P_NODE_82903_length_245_cov_0.895349_g81783_i0 PRJNA741997 82903 245 0.895349 2.19360505 Pseudobdellovibrio sp. HCB154 3386277 Bacteria Bacteria 176 1.26e-39   NTclustered gi|2872995934|gb|CP176530.1| 3386277 g81783 i0 81.172 1.93469387755102 239 28 96 11 7 241 2457436 2457211 Pseudobdellovibrio sp. HCB154 chromosome, complete genome blastn 474 176 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp. HCB154
8374621 8374621 PRJNA741997_P_NODE_15667_length_602_cov_1.578450_g14563_i0 PRJNA741997 15667 602 1.57845 9.502269 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 907 0   NTclustered gi|2800948966|gb|CP168973.1| 959 g14563 i0 94.701 188.476744186047 585 30 97 1 1 585 1677528 1676945 Bdellovibrio bacteriovorus strain HK2 chromosome, complete genome blastn 113463 907 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
12200946 12200946 PRJNA741997_P_NODE_58730_length_281_cov_1.110577_g57610_i0 PRJNA741997 58730 281 1.110577 3.12072137 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 379 1.05e-100   NTclustered gi|2621706492|emb|OY764265.1| 3034175 g57610 i0 91.103 236.97153024911 281 24 100 1 1 281 1697671 1697950 MAG: Bdellovibrionota bacterium isolate efddfb02-ff0c-4ac5-ae96-c61d995422a3 genome assembly, chromosome: 1 blastn 66589 379 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
16024132 16024132 PRJNA741997_P_NODE_56653_length_285_cov_1.452830_g55533_i0 PRJNA741997 56653 285 1.45283 4.1405655 Peredibacter starrii 28202 Bacteria Bacteria 455 1.72e-123   NTclustered gi|2631252187|gb|CP139487.1| 28202 g55533 i0 95.455 18.3649122807018 286 11 100 2 1 285 512181 512465 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 5234 455 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;