RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA741997 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5824870 5824870 PRJNA741997_P_NODE_10885_length_765_cov_2.660405_g9874_i0 PRJNA741997 10885 765 2.660405 20.35209825 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 501 6.339999999999998e-137   NTclustered gi|223997787|ref|XM_002288531.1| 296543 g9874 i0 78.674 90.2235294117647 769 152 99 12 3 765 1083 321 Thalassiosira pseudonana CCMP1335 heat shock protein/chaperone (hsp70_4), mRNA blastn 69021 501 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
6302217 6302217 PRJNA741997_P_NODE_82725_length_245_cov_0.895349_g81605_i0 PRJNA741997 82725 245 0.895349 2.19360505 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 132 2.76e-26   NTclustered gi|9885790|gb|AF289048.1|AF289048 3005 g81605 i0 87.611 32.1632653061224 113 14 46 0 7 119 2269 2157 Rhizosolenia setigera internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 7880 132 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Rhizosoleniales Rhizosoleniaceae Sundstroemia Sundstroemia setigera
7099972 7099972 PRJNA741997_P_NODE_11826_length_723_cov_2.803077_g7440_i1 PRJNA741997 11826 723 2.803077 20.26624671 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 420 1.7199999999999998e-112   NTclustered gi|657012367|gb|KF302531.1| 2850 g7440 i1 87.955 74.567081604426 357 41 49 2 294 649 38 393 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 53912 420 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
13475576 13475576 PRJNA741997_P_NODE_8791_length_884_cov_18.154131_g7874_i0 PRJNA741997 8791 884 18.154131 160.48251804 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 411 1.28e-109   NTclustered gi|657012367|gb|KF302531.1| 2850 g7874 i0 87.088 57.2352941176471 364 45 41 2 275 637 385 23 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 50596 411 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
24947770 24947770 PRJNA741997_P_NODE_18120_length_547_cov_1.092827_g17009_i0 PRJNA741997 18120 547 1.092827 5.97776369 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 449 1.6299999999999998e-121   NTclustered gi|657012367|gb|KF302531.1| 2850 g17009 i0 87.824 80.3107861060329 386 43 70 4 90 473 10 393 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 43930 449 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;