RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA741997 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1997664 1997664 PRJNA741997_P_NODE_71902_length_251_cov_0.865169_g70782_i0 PRJNA741997 71902 251 0.865169 2.17157419 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 206 1.65e-48   NTclustered gi|2874254000|emb|OY970325.1| 157466 g70782 i0 85.366 387.665338645418 205 23 80 6 1 201 1305164 1305365 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 97304 206 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
14750487 14750487 PRJNA741997_P_NODE_57592_length_283_cov_1.466667_g56472_i0 PRJNA741997 57592 283 1.466667 4.15066761 Armatimonadota bacterium 2033014 Bacteria Bacteria 52.8 0.026   NTclustered gi|2314718026|dbj|AP024674.1| 2033014 g56472 i0 100 0.0989399293286219 28 0 10 0 238 265 965254 965281 MAG: Armatimonadetes bacterium KatS3mg024 DNA, complete genome blastn 28 52.8 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;