RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA741997 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
721652 721652 PRJNA741997_P_NODE_73641_length_250_cov_0.870056_g72521_i0 PRJNA741997 73641 250 0.870056 2.17514 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 337 5.58e-88   NTclustered gi|2258874150|gb|CP060230.1| 2052152 g72521 i0 90.873 611.128 252 21 100 2 1 250 384019 383768 MAG: Candidatus Nomurabacteria bacterium isolate HK-STAS-PATE-34 chromosome blastn 152782 337 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
4550246 4550246 PRJNA741997_P_NODE_90564_length_232_cov_2.534591_g89444_i0 PRJNA741997 90564 232 2.534591 5.88025112 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 267 6.809999999999999e-67   NTclustered gi|2621703606|emb|OY761465.1| 2838779 g89444 i0 88.288 100.336206896552 222 26 96 0 11 232 2287062 2286841 MAG: Candidatus Binatia bacterium isolate d3e24e22-6b5b-4867-8422-75782eed2520 genome assembly, chromosome: 1 blastn 23278 267 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
23674498 23674498 PRJNA741997_P_NODE_40879_length_340_cov_0.865169_g39759_i0 PRJNA741997 40879 340 0.865169 2.9415746 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 56.5 0.002   NTclustered gi|1958035545|gb|CP064978.1| 2030811 g39759 i0 100 0.0882352941176471 30 0 9 0 63 92 915567 915596 MAG: Candidatus Peregrinibacteria bacterium isolate Fred_18-Q3-R57-64_BAT3C.1_cln chromosome, complete genome blastn 30 56.5 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;