RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA741997" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 7 ✖

bioproject 1

  • PRJNA741997 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
721397 721397 PRJNA741997_P_NODE_31061_length_392_cov_1.394984_g29941_i0 PRJNA741997 31061 392 1.394984 5.46833728 Thecamonas trahens 529818 Root_unresolved Root_unresolved 169 3.57e-37   NTclustered gi|923126900|ref|XM_013901463.1| 461836 g29941 i0 78.74 3.74744897959184 254 52 65 2 1 253 1246 994 Thecamonas trahens ATCC 50062 serine/threonine-protein phosphatase 2A regulatory subunit pppA (AMSG_06862), partial mRNA blastn 1469 169 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
9650183 9650183 PRJNA741997_P_NODE_84988_length_244_cov_0.900585_g83868_i0 PRJNA741997 84988 244 0.900585 2.1974274 Thecamonas trahens 529818 Root_unresolved Root_unresolved 63.9 1.02e-5   NTclustered gi|923124391|ref|XM_013900210.1| 461836 g83868 i0 97.297 0.30327868852459 37 1 15 0 65 101 3214 3178 Thecamonas trahens ATCC 50062 uncharacterized protein (AMSG_07869), partial mRNA blastn 74 63.9 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
12200967 12200967 PRJNA741997_P_NODE_6170_length_1093_cov_7.297059_g5436_i0 PRJNA741997 6170 1093 7.297059 79.75685487 Thecamonas trahens 529818 Root_unresolved Root_unresolved 409 5.73e-109   NTclustered gi|923134252|ref|XM_013905138.1| 461836 g5436 i0 76.549 17.8975297346752 823 147 73 32 186 985 997 198 Thecamonas trahens ATCC 50062 adenine nucleotide translocator (AMSG_02751), mRNA blastn 19562 409 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
14750233 14750233 PRJNA741997_P_NODE_18732_length_535_cov_4.121212_g17618_i0 PRJNA741997 18732 535 4.121212 22.0484842 Thecamonas trahens 529818 Root_unresolved Root_unresolved 202 4.93e-47   NTclustered gi|923125359|ref|XM_013900694.1| 461836 g17618 i0 81.395 12.1570093457944 258 38 47 8 87 339 529 277 Thecamonas trahens ATCC 50062 calmodulin (AMSG_07687), mRNA blastn 6504 202 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
21124320 21124320 PRJNA741997_P_NODE_89077_length_241_cov_0.916667_g87957_i0 PRJNA741997 89077 241 0.916667 2.20916747 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 243 1.2e-59   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g87957 i0 85.957 56.3775933609959 235 23 96 9 10 240 3089 3317 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13587 243 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
22398723 22398723 PRJNA741997_P_NODE_14258_length_640_cov_1.007055_g13169_i0 PRJNA741997 14258 640 1.007055 6.445152 Thecamonas trahens 529818 Root_unresolved Root_unresolved 508 3.14e-139   NTclustered gi|923137248|ref|XM_013906635.1| 461836 g13169 i0 82.837 81.8375 571 95 89 3 50 619 1129 1697 Thecamonas trahens ATCC 50062 inositol-3-phosphate synthase (AMSG_00912), mRNA blastn 52376 508 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
22398844 22398844 PRJNA741997_P_NODE_3138_length_1539_cov_2.623465_g2720_i0 PRJNA741997 3138 1539 2.623465 40.37512635 Amastigomonas marina 234594 Root_unresolved Root_unresolved 1011 0   NTclustered gi|31982973|gb|AY236711.1| 234594 g2720 i0 80.723 91.6471734892788 1328 231 85 16 10 1320 351 1670 Amastigomonas marina heat shock protein 90 (Hsp90) gene, partial cds blastn 141045 1011 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Amastigomonas Amastigomonas marina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;