RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA738523" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 8 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA738523 · 8 ✖

analysis 1

  • blastn · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1995553 1995553 PRJNA738523_P_NODE_11522_length_249_cov_1.539773_g11451_i0 PRJNA738523 11522 249 1.539773 3.83403477 Crassostrea virginica 6565 Mollusca Mollusca 139 1.68e-28   NTclustered gi|1242750027|ref|XM_022458054.1| 6565 g11451 i0 79.412 3.68273092369478 204 36 81 6 29 229 456 656 PREDICTED: Crassostrea virginica 40S ribosomal protein SA-like (LOC111118540), mRNA blastn 917 139 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Crassostrea Crassostrea virginica
3270867 3270867 PRJNA738523_P_NODE_16103_length_241_cov_0.916667_g16032_i0 PRJNA738523 16103 241 0.916667 2.20916747 Bradybaena similaris 145626 Mollusca Mollusca 60.2 1.3e-4   NTclustered gi|2912990805|dbj|AP039595.1| 145626 g16032 i0 92.683 3.82157676348548 41 3 17 0 131 171 17184111 17184071 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 14, sequence blastn 921 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
4548078 4548078 PRJNA738523_P_NODE_8224_length_272_cov_1.180905_g8153_i0 PRJNA738523 8224 272 1.180905 3.2120616 Octopus sinensis 2607531 Mollusca Mollusca 110 1.46e-19   NTclustered gi|1914655814|ref|XR_004998761.1| 2607531 g8153 i0 92.208 30.3823529411765 77 6 28 0 196 272 2243 2319 PREDICTED: Octopus sinensis uncharacterized LOC118763007 (LOC118763007), ncRNA blastn 8264 110 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus sinensis
8372875 8372875 PRJNA738523_P_NODE_8947_length_265_cov_1.338542_g8876_i0 PRJNA738523 8947 265 1.338542 3.5471363 Pecten maximus 6579 Mollusca Mollusca 52.8 0.024   NTclustered gi|1835506367|ref|XM_033900255.1| 6579 g8876 i0 94.118 0.128301886792453 34 2 13 0 194 227 613 580 PREDICTED: Pecten maximus uncharacterized LOC117338891 (LOC117338891), mRNA blastn 34 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Pecten Pecten maximus
14748437 14748437 PRJNA738523_P_NODE_11312_length_250_cov_0.870056_g11241_i0 PRJNA738523 11312 250 0.870056 2.17514 Patella caerulea 87958 Mollusca Mollusca 191 4.6e-44   NTclustered gi|669205831|gb|KF494231.1| 87958 g11241 i0 80.894 92.84 246 43 98 4 7 250 397 154 Patella caerulea beta-actin mRNA, partial cds blastn 23210 191 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella caerulea
19846533 19846533 PRJNA738523_P_NODE_6016_length_297_cov_1.031250_g5945_i0 PRJNA738523 6016 297 1.03125 3.0628125 Mytilus californianus 6549 Mollusca Mollusca 100 9.71e-17   NTclustered gi|2334779967|ref|XM_052213681.1| 6549 g5945 i0 73.946 0.878787878787879 261 62 87 4 14 271 2948 3205 PREDICTED: Mytilus californianus myosin heavy chain, striated muscle-like (LOC127708640), mRNA blastn 261 100 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus
22396993 22396993 PRJNA738523_P_NODE_2258_length_432_cov_1.696379_g2187_i0 PRJNA738523 2258 432 1.696379 7.32835728 Haliotis asinina 109174 Mollusca Mollusca 209 2.34e-49   NTclustered gi|2793421121|ref|XM_067823659.1| 109174 g2187 i0 80.515 8.08101851851852 272 53 63 0 40 311 61 332 PREDICTED: Haliotis asinina histone H2A-like (LOC137292118), mRNA blastn 3491 209 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis asinina
23672595 23672595 PRJNA738523_P_NODE_7519_length_279_cov_1.121359_g7448_i0 PRJNA738523 7519 279 1.121359 3.12859161 Mytilus californianus 6549 Mollusca Mollusca 209 1.44e-49   NTclustered gi|2334736617|ref|XM_052202326.1| 6549 g7448 i0 80.216 13.921146953405 278 55 99 0 1 278 573 296 PREDICTED: Mytilus californianus ras-related protein Rab-1A (LOC127698700), transcript variant X1, mRNA blastn 3884 209 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus californianus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;