RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA738523" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA738523 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10923448 10923448 PRJNA738523_P_NODE_14229_length_244_cov_1.783626_g14158_i0 PRJNA738523 14229 244 1.783626 4.35204744 Patiria miniata 46514 Echinodermata other_Eukaryota 58.4 4.73e-4   NTclustered gi|1944932961|ref|XM_038222080.1| 46514 g14158 i0 91.111 0.483606557377049 45 0 18 4 167 211 5086 5126 PREDICTED: Patiria miniata bromodomain and WD repeat-containing protein 3-like (LOC119745602), transcript variant X1, mRNA blastn 118 58.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
18571367 18571367 PRJNA738523_P_NODE_7615_length_278_cov_1.024390_g7544_i0 PRJNA738523 7615 278 1.02439 2.8478042 Patiria miniata 46514 Echinodermata other_Eukaryota 231 3.06e-56   NTclustered gi|1944861957|ref|XM_038196751.1| 46514 g7544 i0 82.206 45.3273381294964 281 38 99 11 1 275 797 1071 PREDICTED: Patiria miniata 26S proteasome regulatory subunit 6A-B (LOC119725354), mRNA blastn 12601 231 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;