RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA738523" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA738523 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
719500 719500 PRJNA738523_P_NODE_11301_length_250_cov_0.870056_g11230_i0 PRJNA738523 11301 250 0.870056 2.17514 Synchytrium microbalum 1806994 Fungi Fungi 150 7.799999999999999e-32   NTclustered gi|1759143555|ref|XM_031167200.1| 1806994 g11230 i0 82.456 51.224 171 30 68 0 11 181 266 96 Synchytrium microbalum uncharacterized protein (SmJEL517_g01272), partial mRNA blastn 12806 150 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium microbalum
13473380 13473380 PRJNA738523_P_NODE_1671_length_496_cov_2.323877_g1600_i0 PRJNA738523 1671 496 2.323877 11.52642992 Polychytrium aggregatum 110093 Fungi Fungi 309 2.6e-79   NTclustered gi|2432155310|ref|XM_053111519.1| 110093 g1600 i0 83.792 65.2802419354839 327 51 66 2 106 431 416 91 Polychytrium aggregatum 60S ribosomal protein L23 (BJ171DRAFT_510921), mRNA blastn 32379 309 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;