RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA738523" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 6 ✖

bioproject 1

  • PRJNA738523 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2473135 2473135 PRJNA738523_P_NODE_5962_length_298_cov_1.262222_g5891_i0 PRJNA738523 5962 298 1.262222 3.76142156 Deinococcus 1298 Bacteria Bacteria 551 2.239999999999999e-152   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g5891 i0 100 219.597315436242 298 0 100 0 1 298 1454146 1453849 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 65440 551 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
5823113 5823113 PRJNA738523_P_NODE_13225_length_246_cov_0.890173_g13154_i0 PRJNA738523 13225 246 0.890173 2.18982558 Thermus scotoductus 37636 Bacteria Bacteria 427 3.16e-115   NTclustered gi|320149275|gb|CP001962.1| 743525 g13154 i0 97.967 6.92682926829268 246 5 100 0 1 246 498949 498704 Thermus scotoductus SA-01, complete genome blastn 1704 427 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus scotoductus
5823119 5823119 PRJNA738523_P_NODE_13885_length_245_cov_0.895349_g13814_i0 PRJNA738523 13885 245 0.895349 2.19360505 Deinococcus wulumuqiensis 980427 Bacteria Bacteria 448 2.41e-121   NTclustered gi|1819261009|gb|CP049357.1| 1288484 g13814 i0 99.592 17.0612244897959 245 1 100 0 1 245 354416 354660 Deinococcus wulumuqiensis R12 chromosome, complete genome blastn 4180 448 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus wulumuqiensis
7575654 7575654 PRJNA738523_P_NODE_16366_length_240_cov_2.604790_g16295_i0 PRJNA738523 16366 240 2.60479 6.251496 Deinococcus 1298 Bacteria Bacteria 398 2.4099999999999996e-106   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g16295 i0 97.034 201.279166666667 236 7 98 0 3 238 1454849 1454614 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 48307 398 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
12198874 12198874 PRJNA738523_P_NODE_10690_length_251_cov_0.865169_g10619_i0 PRJNA738523 10690 251 0.865169 2.17157419 Deinococcus altitudinis 468914 Bacteria Bacteria 217 7.619999999999999e-52   NTclustered gi|2865404944|gb|CP129415.1| 468914 g10619 i0 84.977 19.7171314741036 213 32 85 0 1 213 1771170 1771382 Deinococcus altitudinis strain LMG 24022 chromosome, complete genome blastn 4949 217 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus altitudinis
19049459 19049459 PRJNA738523_P_NODE_11835_length_249_cov_0.875000_g11764_i0 PRJNA738523 11835 249 0.875 2.17875 Deinococcus 1298 Bacteria Bacteria 460 3.16e-125   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g11764 i0 100 2 249 0 100 0 1 249 1660700 1660948 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 498 460 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;