RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA738523" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA738523 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6301764 6301764 PRJNA738523_P_NODE_10225_length_253_cov_1.483333_g10154_i0 PRJNA738523 10225 253 1.483333 3.75283249 Planctopirus 1649480 Bacteria Bacteria 462 8.95e-126   NTclustered gi|265678917|ref|NR_029225.1| 120 g10154 i0 99.605 102.652173913043 253 1 100 0 1 253 651 903 Planctopirus limnophila strain Mu 290 16S ribosomal RNA, partial sequence blastn 25971 462 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctopirus Planctopirus limnophila
10126397 10126397 PRJNA738523_P_NODE_6188_length_293_cov_2.100000_g6117_i0 PRJNA738523 6188 293 2.1 6.153 Gemmata 113 Bacteria Bacteria 126 1.58e-24   NTclustered gi|1727537522|gb|CP042911.1| 114 g6117 i0 80.488 41.6109215017065 164 32 56 0 118 281 3101077 3100914 Gemmata obscuriglobus strain DSM 5831 chromosome, complete genome blastn 12192 126 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Gemmata Gemmata obscuriglobus
19846492 19846492 PRJNA738523_P_NODE_14556_length_244_cov_0.900585_g14485_i0 PRJNA738523 14556 244 0.900585 2.1974274 Paludisphaera borealis 1387353 Bacteria Bacteria 309 1.1800000000000002e-79   NTclustered gi|1133581311|gb|CP019082.1| 1387353 g14485 i0 89.558 97.483606557377 249 19 100 7 1 244 122501 122255 Paludisphaera borealis strain PX4 chromosome, complete genome blastn 23786 309 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Paludisphaera Paludisphaera borealis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;