contig_metadata
8 rows where analysis = "blastn", bioproject = "PRJNA737474" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25581150 | 25581150 | PRJNA737474f_S_NODE_6961_length_787_cov_2.929972_g6399_i0 | PRJNA737474 | 6961 | 787 | 2.929972 | 23.05887964 | Pedosphaera parvula Ellin514 | 320771 | Bacteria | Bacteria | 758 | 0 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g6399 | i0 | 84.774 | 69.9390088945362 | 775 | 97 | 97 | 21 | 24 | 787 | 1807 | 1043 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 55042 | 758 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 25586652 | 25586652 | PRJNA737474g_S_NODE_326265_length_250_cov_0.949153_g324971_i0 | PRJNA737474 | 326265 | 250 | 0.949153 | 2.3728825 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 195 | 3.55e-45 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g324971 | i0 | 91.489 | 4.332 | 141 | 12 | 56 | 0 | 108 | 248 | 3216162 | 3216302 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 1083 | 195 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 25720002 | 25720002 | PRJNA737474g_S_NODE_17682_length_740_cov_1.764618_g16512_i0 | PRJNA737474 | 17682 | 740 | 1.764618 | 13.0581732 | Candidatus Xiphinematobacter sp. | 1903058 | Bacteria | Bacteria | 534 | 6.04e-147 | NTclustered | gi|1966850802|gb|CP068472.1| | 1903058 | g16512 | i0 | 92.513 | 0.827027027027027 | 374 | 26 | 50 | 2 | 329 | 701 | 244070 | 244442 | MAG: Candidatus Xiphinematobacter sp. isolate P3-11 chromosome, complete genome | blastn | 612 | 534 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Candidatus Xiphinematobacter | Candidatus Xiphinematobacter sp. | |||
| 25987421 | 25987421 | PRJNA737474f_S_NODE_26252_length_413_cov_1.852941_g25575_i0 | PRJNA737474 | 26252 | 413 | 1.852941 | 7.65264633 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 239 | 2.84e-58 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g25575 | i0 | 80.635 | 2.76513317191283 | 315 | 56 | 76 | 5 | 97 | 409 | 55578 | 55267 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 1142 | 239 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 25995561 | 25995561 | PRJNA737474g_S_NODE_38404_length_461_cov_1.896907_g37115_i0 | PRJNA737474 | 38404 | 461 | 1.896907 | 8.74474127 | Oleiharenicola sp. Vm1 | 3398393 | Bacteria | Bacteria | 322 | 3.09e-83 | NTclustered | gi|2912653302|gb|CP180537.1| | 3398393 | g37115 | i0 | 79.437 | 2.67678958785249 | 462 | 89 | 99 | 6 | 1 | 459 | 4560252 | 4559794 | Oleiharenicola sp. Vm1 chromosome, complete genome | blastn | 1234 | 322 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Oleiharenicola | Oleiharenicola sp. Vm1 | |
| 25998188 | 25998188 | PRJNA737474g_S_NODE_81428_length_347_cov_4.051095_g80134_i0 | PRJNA737474 | 81428 | 347 | 4.051095 | 14.05729965 | Actomonas aquatica | 2866162 | Bacteria | Bacteria | 86.1 | 3.24e-12 | NTclustered | gi|2647674565|gb|CP139781.1| | 2866162 | g80134 | i0 | 97.959 | 13.9567723342939 | 49 | 1 | 14 | 0 | 20 | 68 | 2403704 | 2403656 | Actomonas aquatica strain WL0086 chromosome, complete genome | blastn | 4843 | 86.1 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Actomonas | Actomonas aquatica | |
| 26118244 | 26118244 | PRJNA737474d_S_NODE_38693_length_247_cov_1.051724_g38099_i0 | PRJNA737474 | 38693 | 247 | 1.051724 | 2.59775828 | Nibricoccus sp. IMCC34717 | 3034021 | Bacteria | Bacteria | 54.7 | 0.006 | NTclustered | gi|2850969968|gb|CP119759.1| | 3034021 | g38099 | i0 | 96.875 | 0.129554655870445 | 32 | 1 | 13 | 0 | 54 | 85 | 1451984 | 1452015 | Nibricoccus sp. IMCC34717 chromosome, complete genome | blastn | 32 | 54.7 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Nibricoccus | Nibricoccus sp. IMCC34717 | |
| 26260563 | 26260563 | PRJNA737474f_S_NODE_36470_length_372_cov_1.461538_g35792_i0 | PRJNA737474 | 36470 | 372 | 1.461538 | 5.43692136 | Candidatus Xiphinematobacter sp. | 1903058 | Bacteria | Bacteria | 388 | 2.3699999999999997e-103 | NTclustered | gi|1966850802|gb|CP068472.1| | 1903058 | g35792 | i0 | 99.531 | 0.57258064516129 | 213 | 1 | 57 | 0 | 160 | 372 | 244442 | 244230 | MAG: Candidatus Xiphinematobacter sp. isolate P3-11 chromosome, complete genome | blastn | 213 | 388 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Candidatus Xiphinematobacter | Candidatus Xiphinematobacter sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;