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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA737474" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA737474 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25576911 25576911 PRJNA737474f_S_NODE_125897_length_277_cov_1.887255_g125219_i0 PRJNA737474 125897 277 1.887255 5.22769635 Copromyxa sp. PKD 2 3118317 Tubulinea other_Eukaryota 507 4.53e-139   NTclustered gi|399764168|gb|JQ271679.1| 1215977 g125219 i0 99.639 71.4223826714802 277 1 100 0 1 277 373 97 Copromyxa sp. PKD 2011 strain ZEB4 18S ribosomal RNA gene, partial sequence blastn 19784 507 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
25579785 25579785 PRJNA737474f_S_NODE_32497_length_385_cov_3.362179_g31819_i0 PRJNA737474 32497 385 3.362179 12.94438915 Copromyxa sp. PKD 2 3118317 Tubulinea other_Eukaryota 704 0   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g31819 i0 99.74 71.0285714285714 384 1 99 0 2 385 988 605 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 27346 704 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
25581980 25581980 PRJNA737474g_S_NODE_10129_length_1225_cov_11.802083_g9223_i0 PRJNA737474 10129 1225 11.802083 144.57551675 Copromyxa protea 931554 Tubulinea other_Eukaryota 1197 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g9223 i0 86.523 15.6424489795918 1113 120 89 21 1 1089 283 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 19162 1197 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
25723666 25723666 PRJNA737474g_S_NODE_401466_length_244_cov_0.888889_g400172_i0 PRJNA737474 401466 244 0.888889 2.16888916 Copromyxa protea 931554 Tubulinea other_Eukaryota 285 1.99e-72   NTclustered gi|1042160949|dbj|LC102281.1| 931554 g400172 i0 87.755 8.68852459016393 245 28 100 2 1 244 719 476 Copromyxa protea gene for elongation factor 2 alpha, partial cds, strain: LUM blastn 2120 285 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
25726457 25726457 PRJNA737474g_S_NODE_95906_length_331_cov_4.643411_g94612_i0 PRJNA737474 95906 331 4.643411 15.36969041 Copromyxa protea 931554 Tubulinea other_Eukaryota 383 9.73e-102   NTclustered gi|508737347|dbj|AB766053.1| 931554 g94612 i0 89.667 18.7945619335347 300 31 91 0 32 331 1 300 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 6221 383 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
25859702 25859702 PRJNA737474g_S_NODE_406379_length_243_cov_1.641176_g405085_i0 PRJNA737474 406379 243 1.641176 3.98805768 Copromyxa sp. PKD 2 3118317 Tubulinea other_Eukaryota 398 2.4399999999999997e-106   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g405085 i0 100 68.8847736625514 215 0 88 0 29 243 321 107 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 16739 398 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
25985414 25985414 PRJNA737474f_S_NODE_13508_length_548_cov_9.816842_g12843_i0 PRJNA737474 13508 548 9.816842 53.79629416 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 662 0   NTclustered gi|33946358|gb|AY294158.1| 239731 g12843 i0 95.012 72.8485401459854 421 21 77 0 128 548 1148 728 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 39921 662 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
26128137 26128137 PRJNA737474g_S_NODE_172837_length_287_cov_1.518692_g171543_i0 PRJNA737474 172837 287 1.518692 4.35864604 Copromyxa sp. PKD 2 3118317 Tubulinea other_Eukaryota 171 7.02e-38   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g171543 i0 94.545 25.418118466899 110 6 38 0 178 287 1876 1767 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 7295 171 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
26128355 26128355 PRJNA737474g_S_NODE_183205_length_283_cov_3.066667_g181911_i0 PRJNA737474 183205 283 3.066667 8.67866761 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 202 2.4499999999999998e-47   NTclustered gi|33946358|gb|AY294158.1| 239731 g181911 i0 91.724 51.886925795053 145 12 51 0 139 283 1148 1004 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 14684 202 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
26128357 26128357 PRJNA737474g_S_NODE_183277_length_283_cov_2.319048_g181983_i0 PRJNA737474 183277 283 2.319048 6.56290584 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 193 1.47e-44   NTclustered gi|909719647|gb|KT185627.1| 5778 g181983 i0 82.805 77.3180212014134 221 32 76 5 10 225 28119 27900 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 21881 193 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26132700 26132700 PRJNA737474g_S_NODE_465565_length_235_cov_3.925926_g464271_i0 PRJNA737474 465565 235 3.925926 9.2259261 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 206 1.53e-48   NTclustered gi|33946358|gb|AY294158.1| 239731 g464271 i0 96.032 49.7574468085106 126 5 54 0 110 235 1151 1026 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 11693 206 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
26133604 26133604 PRJNA737474g_S_NODE_59525_length_385_cov_2.185897_g58232_i0 PRJNA737474 59525 385 2.185897 8.41570345 Hartmannella cantabrigiensis 239731 Tubulinea other_Eukaryota 614 3.7399999999999996e-171   NTclustered gi|33946358|gb|AY294158.1| 239731 g58232 i0 95.561 94.2051948051948 383 17 99 0 1 383 722 1104 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 36269 614 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
26259850 26259850 PRJNA737474f_S_NODE_2742_length_1479_cov_38.813656_g2386_i0 PRJNA737474 2742 1479 38.813656 574.05397224 Copromyxa protea 931554 Tubulinea other_Eukaryota 1574 0   NTclustered gi|508737347|dbj|AB766053.1| 931554 g2386 i0 87.365 25.3015551048005 1393 150 93 16 40 1410 1 1389 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 37421 1574 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
26530763 26530763 PRJNA737474f_S_NODE_190384_length_253_cov_1.511111_g189706_i0 PRJNA737474 190384 253 1.511111 3.82311083 Copromyxa sp. PKD 2 3118317 Tubulinea other_Eukaryota 344 3.3799999999999993e-90   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g189706 i0 100 21.3359683794466 186 0 74 0 1 186 1460 1645 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 5398 344 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;