RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA737474" and tax_phylum = "Synergistota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA737474 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25575789 25575789 PRJNA737474e_S_NODE_33769_length_239_cov_2.572289_g32887_i0 PRJNA737474 33769 239 2.572289 6.14777071 Fretibacterium fastidiosum 651822 Bacteria Bacteria 270 5.449999999999999e-68   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g32887 i0 87.983 196.07949790795 233 22 96 5 10 239 67757 67986 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 46863 270 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
25711428 25711428 PRJNA737474e_S_NODE_24938_length_266_cov_1.580311_g24056_i0 PRJNA737474 24938 266 1.580311 4.20362726 Fretibacterium fastidiosum 651822 Bacteria Bacteria 296 1.02e-75   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g24056 i0 88.618 114.597744360902 246 25 92 3 1 245 69929 70172 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 30483 296 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;