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contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA737474" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 26 ✖

tax_clade 1

bioproject 1

  • PRJNA737474 · 26 ✖

analysis 1

  • blastn · 26 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25576412 25576412 PRJNA737474f_S_NODE_10513_length_625_cov_3228.639493_g9876_i0 PRJNA737474 10513 625 3228.639493 20178.99683125 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 148 7.689999999999999e-31   NTclustered gi|166036439|emb|CU349481.1| 100861 g9876 i0 79.091 5.696 220 42 35 2 384 601 754 537 Aphanomyces euteiches cDNA blastn 3560 148 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25583444 25583444 PRJNA737474g_S_NODE_159049_length_292_cov_5.164384_g157755_i0 PRJNA737474 159049 292 5.164384 15.08000128 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 143 1.56e-29   NTclustered gi|673031501|ref|XM_008871490.1| 157072 g157755 i0 88.793 62.8801369863014 116 13 40 0 12 127 94 209 Aphanomyces invadans polyubiquitin partial mRNA blastn 18361 143 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
25632182 25632182 PRJNA737474g_S_NODE_89105_length_338_cov_2.283019_g87811_i0 PRJNA737474 89105 338 2.283019 7.71660422 root 1 Root_unresolved Root_unresolved 52.8 0.032   NTclustered gi|698804889|ref|XM_009837172.1| 112090 g87811 i0 100 0.165680473372781 28 0 8 0 282 309 2113 2086 Aphanomyces astaci hypothetical protein mRNA blastn 56 52.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
25707716 25707716 PRJNA737474c_S_NODE_27498_length_245_cov_1.302326_g26667_i0 PRJNA737474 27498 245 1.302326 3.1906987 Aphanomyces sinensis 1125843 SAR_Eukaryotes SAR_Eukaryotes 346 9.059999999999999e-91   NTclustered gi|378925979|gb|JQ070142.1| 1125843 g26667 i0 99.474 77.3224489795918 190 1 78 0 12 201 62 251 Aphanomyces sinensis strain ATCC MYA-4825 28S ribosomal RNA gene, complete sequence blastn 18944 346 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sinensis
25708830 25708830 PRJNA737474d_S_NODE_16994_length_372_cov_3.334448_g16400_i0 PRJNA737474 16994 372 3.334448 12.40414656 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 193 2e-44   NTclustered gi|669163127|ref|XM_008618904.1| 1156394 g16400 i0 82.301 8.36290322580645 226 36 60 4 83 306 458 235 Saprolegnia diclina VS20 hypothetical protein partial mRNA blastn 3111 193 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
25710262 25710262 PRJNA737474d_S_NODE_5970_length_648_cov_8.260870_g5414_i0 PRJNA737474 5970 648 8.26087 53.5304376 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 289 4.51e-73   NTclustered gi|695447497|ref|XM_009536456.1| 67593 g5414 i0 79.898 45.4212962962963 393 79 61 0 249 641 2087 1695 Phytophthora sojae hypothetical protein mRNA blastn 29433 289 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
25714290 25714290 PRJNA737474f_S_NODE_187002_length_254_cov_1.403315_g186324_i0 PRJNA737474 187002 254 1.403315 3.5644201 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 204 6.02e-48   NTclustered gi|166039230|emb|CU355280.1| 100861 g186324 i0 83.043 75.4370078740157 230 33 89 5 4 230 306 532 Aphanomyces euteiches cDNA blastn 19161 204 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25720798 25720798 PRJNA737474g_S_NODE_21490_length_645_cov_1.917832_g20267_i0 PRJNA737474 21490 645 1.917832 12.3700164 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 416 1.97e-111   NTclustered gi|166047778|emb|CU362893.1| 100861 g20267 i0 78.694 67.3658914728682 643 124 99 12 7 642 124 760 Aphanomyces euteiches cDNA blastn 43451 416 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25852903 25852903 PRJNA737474f_S_NODE_56627_length_330_cov_3.303502_g55949_i0 PRJNA737474 56627 330 3.303502 10.9015566 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 213 1.35e-50   NTclustered gi|1111669769|ref|NC_032052.1| 157072 g55949 i0 84 50.9939393939394 225 33 68 3 107 329 9307 9530 Aphanomyces invadans isolate NJM9701 mitochondrion, complete genome blastn 16828 213 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
25854045 25854045 PRJNA737474f_S_NODE_9907_length_645_cov_3115.952797_g9279_i0 PRJNA737474 9907 645 3115.952797 20097.89554065 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 147 2.86e-30   NTclustered gi|166036439|emb|CU349481.1| 100861 g9279 i0 78.995 5.51627906976744 219 42 34 2 25 241 537 753 Aphanomyces euteiches cDNA blastn 3558 147 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25903114 25903114 PRJNA737474g_S_NODE_289667_length_255_cov_2.626374_g288373_i0 PRJNA737474 289667 255 2.626374 6.6972537 Nothophytophthora 2025987 SAR_Eukaryotes SAR_Eukaryotes 185 2.19e-42   NTclustered gi|1229862026|gb|KY788534.1| 2025990 g288373 i0 81.172 94.7882352941176 239 37 92 6 13 247 463 229 Nothophytophthora chlamydospora isolate CL195 beta-tubulin (Btub) gene, partial cds blastn 24171 185 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora chlamydospora
25985399 25985399 PRJNA737474f_S_NODE_134476_length_273_cov_1.520000_g133798_i0 PRJNA737474 134476 273 1.52 4.1496 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 176 1.43e-39   NTclustered gi|166039230|emb|CU355280.1| 100861 g133798 i0 79.31 68.8168498168498 261 46 94 7 1 257 398 142 Aphanomyces euteiches cDNA blastn 18787 176 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
25991916 25991916 PRJNA737474g_S_NODE_16732_length_769_cov_11388.573276_g15587_i0 PRJNA737474 16732 769 11388.573276 87578.12849244 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 154 2.06e-32   NTclustered gi|2795040539|ref|XM_067944827.1| 4785 g15587 i0 84.81 20.4642392717815 158 18 20 4 523 677 1005 851 Phytophthora cinnamomi glyceraldehyde-3-phosphate dehydrogenase (IUM83_19763), partial mRNA blastn 15737 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
26117747 26117747 PRJNA737474d_S_NODE_29525_length_281_cov_2.629808_g28931_i0 PRJNA737474 29525 281 2.629808 7.38976048 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 99 3.28e-16   NTclustered gi|673042388|ref|XM_008876933.1| 157072 g28931 i0 85.87 5.63701067615658 92 13 33 0 177 268 236 145 Aphanomyces invadans 60S ribosomal protein L39 mRNA blastn 1584 99 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
26129974 26129974 PRJNA737474g_S_NODE_263893_length_261_cov_0.622340_g262599_i0 PRJNA737474 263893 261 0.62234 1.6243074 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.007   NTclustered gi|166048529|emb|CU351194.1| 100861 g262599 i0 100 0.440613026819923 29 0 11 0 179 207 65 37 Aphanomyces euteiches cDNA blastn 115 54.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26130941 26130941 PRJNA737474g_S_NODE_323413_length_250_cov_1.519774_g322119_i0 PRJNA737474 323413 250 1.519774 3.799435 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 270 5.74e-68   NTclustered gi|698815387|ref|XM_009842421.1| 112090 g322119 i0 90.64 79.868 203 19 81 0 3 205 112 314 Aphanomyces astaci actin mRNA blastn 19967 270 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
26171241 26171241 PRJNA737474c_S_NODE_17413_length_289_cov_1.481481_g16582_i0 PRJNA737474 17413 289 1.481481 4.28148009 Albugo 65356 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.027   NTclustered gi|325183031|emb|FR824081.1| 890382 g16582 i0 100 0.193771626297578 28 0 10 0 258 285 127698 127725 Albugo laibachii Nc14, genomic contig CONTIG_36_NC14_v4_137019_239 blastn 56 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
26174511 26174511 PRJNA737474g_S_NODE_122565_length_311_cov_1.205882_g121271_i0 PRJNA737474 122565 311 1.205882 3.75029302 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 122 2.1799999999999999e-23   NTclustered gi|1490229970|gb|MH094138.1| 29920 g121271 i0 88.889 32.3601286173633 99 11 32 0 213 311 675 577 Phytophthora cactorum isolate KRJ1 ATP synthase protein 9 (atp9) gene, partial cds; NADH dehydrogenase subunit 9 (nad9) gene, complete cds; and apocytochrome b (cob) gene, partial cds; mitochondrial blastn 10064 122 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
26251866 26251866 PRJNA737474c_S_NODE_21838_length_265_cov_3.770833_g21007_i0 PRJNA737474 21838 265 3.770833 9.99270745 Saprolegnia parasitica CBS 223.65 695850 SAR_Eukaryotes SAR_Eukaryotes 178 3.83e-40   NTclustered gi|813141452|ref|XM_012343573.1| 695850 g21007 i0 86.792 56.811320754717 159 21 60 0 1 159 608 766 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L8 mRNA blastn 15055 178 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
26257646 26257646 PRJNA737474f_S_NODE_131470_length_275_cov_0.891089_g130792_i0 PRJNA737474 131470 275 0.891089 2.45049475 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 220 6.55e-53   NTclustered gi|166047767|emb|CU362882.1| 100861 g130792 i0 89.205 62.2363636363636 176 19 64 0 100 275 98 273 Aphanomyces euteiches cDNA blastn 17115 220 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26267216 26267216 PRJNA737474g_S_NODE_341774_length_249_cov_0.863636_g340480_i0 PRJNA737474 341774 249 0.863636 2.15045364 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 248 2.68e-61   NTclustered gi|166051442|emb|CU364545.1| 100861 g340480 i0 91.257 80.6706827309237 183 14 73 1 65 247 328 508 Aphanomyces euteiches cDNA blastn 20087 248 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
26267513 26267513 PRJNA737474g_S_NODE_36222_length_474_cov_3.733167_g34934_i0 PRJNA737474 36222 474 3.733167 17.69521158 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 106 3.49e-18   NTclustered gi|695445255|ref|XM_009535885.1| 67593 g34934 i0 91.026 1.40084388185654 78 7 16 0 2 79 1183 1260 Phytophthora sojae hypothetical protein partial mRNA blastn 664 106 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
26390870 26390870 PRJNA737474d_S_NODE_9935_length_490_cov_1.685851_g9356_i0 PRJNA737474 9935 490 1.685851 8.2606699 Phytophthora stricta 1401295 SAR_Eukaryotes SAR_Eukaryotes 156 3.54e-33   NTclustered gi|1233050023|gb|KX252214.1| 1401295 g9356 i0 83.237 34.434693877551 173 25 35 4 2 172 1519 1689 Phytophthora stricta isolate 58A1(ex-type) heat shock protein 90 gene, partial cds blastn 16873 156 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora stricta
26393591 26393591 PRJNA737474f_S_NODE_134191_length_273_cov_7.765000_g133513_i0 PRJNA737474 134191 273 7.765 21.19845 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 137 6.73e-28   NTclustered gi|673031501|ref|XM_008871490.1| 157072 g133513 i0 89.72 63.4835164835165 107 11 39 0 1 107 103 209 Aphanomyces invadans polyubiquitin partial mRNA blastn 17331 137 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
26394676 26394676 PRJNA737474f_S_NODE_194327_length_252_cov_1.290503_g193649_i0 PRJNA737474 194327 252 1.290503 3.25206756 Phytophthora cactorum 29920 SAR_Eukaryotes SAR_Eukaryotes 143 1.32e-29   NTclustered gi|1490229970|gb|MH094138.1| 29920 g193649 i0 88.793 46.6785714285714 116 13 46 0 113 228 675 560 Phytophthora cactorum isolate KRJ1 ATP synthase protein 9 (atp9) gene, partial cds; NADH dehydrogenase subunit 9 (nad9) gene, complete cds; and apocytochrome b (cob) gene, partial cds; mitochondrial blastn 11763 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum
26539534 26539534 PRJNA737474g_S_NODE_36248_length_474_cov_2.431421_g34960_i0 PRJNA737474 36248 474 2.431421 11.52493554 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 300 1.49e-76   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g34960 i0 81.671 54.5147679324894 371 59 78 8 105 472 9444 9808 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 25840 300 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;