RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA737474" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA737474 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25571069 25571069 PRJNA737474c_S_NODE_19081_length_279_cov_3.281553_g18250_i0 PRJNA737474 19081 279 3.281553 9.15553287 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 65.8 3.3e-6   NTclustered gi|2107779373|gb|CP070829.1| 2448054 g18250 i0 100 20.9641577060932 35 0 13 0 27 61 4018085 4018119 MAG: Gemmatimonadales bacterium isolate bin109 chromosome blastn 5849 65.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
25986144 25986144 PRJNA737474f_S_NODE_171532_length_259_cov_1.166667_g170854_i0 PRJNA737474 171532 259 1.166667 3.02166753 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 54.7 0.007   NTclustered gi|575456455|gb|CP007128.1| 861299 g170854 i0 96.97 0.127413127413127 33 0 13 1 197 229 5009523 5009492 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 33 54.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
26268483 26268483 PRJNA737474g_S_NODE_439374_length_241_cov_0.904762_g438080_i0 PRJNA737474 439374 241 0.904762 2.18047642 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 119 2.11e-22   NTclustered gi|2874253728|emb|OY969570.1| 412054 g438080 i0 80.745 45.8215767634855 161 24 65 6 14 169 3088166 3088008 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 11043 119 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;