RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA737474" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA737474 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25713485 25713485 PRJNA737474f_S_NODE_145930_length_268_cov_4.056410_g145252_i0 PRJNA737474 145930 268 4.05641 10.8711788 uncultured Chytridiomycota 175247 Fungi Fungi 78.7 4.05e-10   NTclustered gi|262235206|gb|GQ995417.1| 175247 g145252 i0 81.633 23.3022388059701 98 15 36 3 16 112 925 830 Uncultured Chytridiomycota clone T1P1AeC08 18S ribosomal RNA gene, partial sequence blastn 6245 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota         uncultured Chytridiomycota
25722175 25722175 PRJNA737474g_S_NODE_289810_length_255_cov_1.994505_g288516_i0 PRJNA737474 289810 255 1.994505 5.08598775 Fimicolochytrium jonesii 1396493 Fungi Fungi 163 1.03e-35   NTclustered gi|2432091355|ref|XM_053068060.1| 1396493 g288516 i0 79.736 48.521568627451 227 44 89 2 30 255 351 126 Fimicolochytrium jonesii ubiquitin-60S ribosomal protein L40 fusion protein (EV422DRAFT_499054), partial mRNA blastn 12373 163 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
25850705 25850705 PRJNA737474f_S_NODE_213635_length_249_cov_1.198864_g212957_i0 PRJNA737474 213635 249 1.198864 2.98517136 Fimicolochytrium jonesii 1396493 Fungi Fungi 171 5.96e-38   NTclustered gi|2432057110|ref|XM_053069402.1| 1396493 g212957 i0 80.349 72.0803212851406 229 41 91 3 1 227 378 604 Fimicolochytrium jonesii ribosomal protein S7 domain-containing protein (EV422DRAFT_516776), mRNA blastn 17948 171 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;