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contig_metadata

26 rows where analysis = "blastn", bioproject = "PRJNA737474" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 26 ✖

bioproject 1

  • PRJNA737474 · 26 ✖

analysis 1

  • blastn · 26 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25586224 25586224 PRJNA737474g_S_NODE_29961_length_525_cov_2.610619_g28685_i0 PRJNA737474 29961 525 2.610619 13.70574975 Chlamydomonas sp. TK-1983 3056 Plants Plants 219 4.8e-52   NTclustered gi|174203|gb|K02345.1|CRERRA 3056 g28685 i0 100 0.224761904761905 118 0 22 0 100 217 1 118 Chlamydomonas sp. TK-1983 5S ribosomal RNA gene, complete sequence blastn 118 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. TK-1983
25765018 25765018 PRJNA737474f_S_NODE_105378_length_288_cov_3.758140_g104700_i0 PRJNA737474 105378 288 3.75814 10.8234432 Eukaryota 2759 Plants Plants 527 3.63e-145   NTclustered gi|1714003650|gb|MN243923.1| 3079 g104700 i0 99.653 100.274305555556 288 1 100 0 1 288 487 774 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 28879 527 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
25840929 25840929 PRJNA737474b_S_NODE_28507_length_301_cov_2.482456_g27468_i0 PRJNA737474 28507 301 2.482456 7.47219256 Nannochloris normandinae 926285 Plants Plants 388 1.88e-103   NTclustered gi|922575245|gb|JQ921007.1| 926285 g27468 i0 98.636 102.199335548173 220 2 73 1 18 236 35 254 Nannochloris normandinae strain SAG 9.82 23S large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 30762 388 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris normandinae
25841773 25841773 PRJNA737474b_S_NODE_41259_length_253_cov_7.705556_g40220_i0 PRJNA737474 41259 253 7.705556 19.49505668 Prototheca wickerhamii 3111 Plants Plants 422 1.52e-113   NTclustered gi|1929550831|gb|MN794237.1| 3111 g40220 i0 99.145 16.2332015810277 234 2 92 0 4 237 261 28 Prototheca wickerhamii strain DBVPG mitochondrion, complete genome blastn 4107 422 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
25844552 25844552 PRJNA737474d_S_NODE_11771_length_448_cov_4.408000_g11185_i0 PRJNA737474 11771 448 4.408 19.74784 Chlamydomonas reinhardtii 3055 Plants Plants 128 7.01e-25   NTclustered gi|2082253493|ref|XM_043066154.1| 3055 g11185 i0 81.366 210.877232142857 161 27 36 3 75 234 613 771 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_09g405106v5), mRNA blastn 94473 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
25846699 25846699 PRJNA737474e_S_NODE_11747_length_346_cov_6.010989_g10865_i0 PRJNA737474 11747 346 6.010989 20.79802194 Prototheca wickerhamii 3111 Plants Plants 298 3.81e-76   NTclustered gi|14212|emb|X68722.1| 3111 g10865 i0 92.417 51.5231213872832 211 12 60 4 68 275 1142 933 P.wickerhamii mitochondrial gene for large ribosomal RNA blastn 17827 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
25902213 25902213 PRJNA737474g_S_NODE_139691_length_301_cov_2.938596_g138397_i0 PRJNA737474 139691 301 2.938596 8.84517396 Eukaryota 2759 Plants Plants 52.8 0.028   NTclustered gi|2082235944|ref|XM_043058291.1| 3055 g138397 i0 96.875 0.757475083056478 32 0 10 1 222 252 970 1001 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_01g010650v5), mRNA blastn 228 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
25991815 25991815 PRJNA737474g_S_NODE_162108_length_291_cov_1.344037_g160814_i0 PRJNA737474 162108 291 1.344037 3.91114767 Botryococcus braunii 38881 Plants Plants 63.9 1.25e-5   NTclustered gi|918020277|ref|NC_027722.1| 38881 g160814 i0 85.484 0.398625429553265 62 8 21 1 230 291 23241 23181 Botryococcus braunii mitochondrion, complete genome blastn 116 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Botryococcus Botryococcus braunii
26035544 26035544 PRJNA737474d_S_NODE_13100_length_425_cov_4.051136_g12509_i0 PRJNA737474 13100 425 4.051136 17.217328 Eukaryota 2759 Plants Plants 682 0   NTclustered gi|1714003650|gb|MN243923.1| 3079 g12509 i0 100 86.68 369 0 87 0 1 369 502 870 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 36839 682 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
26039682 26039682 PRJNA737474g_S_NODE_368652_length_246_cov_2.601156_g367358_i0 PRJNA737474 368652 246 2.601156 6.39884376 Eukaryota 2759 Plants Plants 425 1.14e-114   NTclustered gi|1714003650|gb|MN243923.1| 3079 g367358 i0 100 93.4227642276423 230 0 93 0 1 230 3 232 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 22982 425 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
26116512 26116512 PRJNA737474c_S_NODE_7565_length_396_cov_4.801858_g6734_i0 PRJNA737474 7565 396 4.801858 19.01535768 Monoraphidium neglectum 145388 Plants Plants 171 1e-37   NTclustered gi|926780633|ref|XM_014043337.1| 145388 g6734 i0 82.234 22.479797979798 197 35 50 0 1 197 256 452 Monoraphidium neglectum 40S ribosomal protein S14-3 mRNA blastn 8902 171 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
26117319 26117319 PRJNA737474d_S_NODE_21445_length_329_cov_3.941406_g20851_i0 PRJNA737474 21445 329 3.941406 12.96722574 Chlamydomonas reinhardtii 3055 Plants Plants 106 2.34e-18   NTclustered gi|2082238114|ref|XM_001701583.2| 3055 g20851 i0 82.645 0.668693009118541 121 19 36 2 25 144 502 621 Chlamydomonas reinhardtii ribosomal protein L19 (CHLRE_02g075700v5), mRNA blastn 220 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
26131254 26131254 PRJNA737474g_S_NODE_34621_length_485_cov_3.980583_g33334_i0 PRJNA737474 34621 485 3.980583 19.30582755 Monoraphidium neglectum 145388 Plants Plants 180 2.08e-40   NTclustered gi|926791300|ref|XM_014048670.1| 145388 g33334 i0 80.417 40.2536082474227 240 43 49 3 2 239 1046 1283 Monoraphidium neglectum Tubulin beta chain mRNA blastn 19523 180 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
26134594 26134594 PRJNA737474g_S_NODE_88221_length_339_cov_2.048872_g86927_i0 PRJNA737474 88221 339 2.048872 6.94567608 Prototheca bovis 2509265 Plants Plants 137 8.59e-28   NTclustered gi|1159431148|gb|KX389287.1| 2509265 g86927 i0 93.478 27.9380530973451 92 6 27 0 248 339 1284 1193 Prototheca bovis isolate SAG-2021 beta-tubulin (TUB1) mRNA, complete cds blastn 9471 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca bovis
26172068 26172068 PRJNA737474d_S_NODE_23989_length_310_cov_4.877637_g23395_i0 PRJNA737474 23989 310 4.877637 15.1206747 Trebouxiophyceae 75966 Plants Plants 63.9 1.34e-5   NTclustered gi|371782132|emb|HE610164.1| 33092 g23395 i0 95 21.1225806451613 40 2 13 0 158 197 37 76 Koliella longiseta plastid partial 23S rRNA gene, strain SAG 470-1 blastn 6548 63.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
26252433 26252433 PRJNA737474c_S_NODE_32206_length_209_cov_6.897059_g31375_i0 PRJNA737474 32206 209 6.897059 14.41485331 uncultured Apatococcus 1229086 Plants Plants 346 7.51e-91   NTclustered gi|1031961068|gb|KX025109.1| 1229086 g31375 i0 98.477 81.0143540669856 197 2 94 1 14 209 1285 1481 Uncultured Apatococcus clone GOGs_K08 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence blastn 16932 346 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Apatococcus
26261152 26261152 PRJNA737474f_S_NODE_52614_length_336_cov_3.148289_g51936_i0 PRJNA737474 52614 336 3.148289 10.57825104 Volvox carteri f. nagariensis 3068 Plants Plants 52.8 0.032   NTclustered gi|302842366|ref|XM_002952681.1| 3068 g51936 i0 100 0.0833333333333333 28 0 8 0 208 235 8514 8487 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_118140), partial mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
26312531 26312531 PRJNA737474g_S_NODE_86470_length_341_cov_2.552239_g85176_i0 PRJNA737474 86470 341 2.552239 8.70313499 Eukaryota 2759 Plants Plants 630 3.2499999999999986e-176   NTclustered gi|1714003650|gb|MN243923.1| 3079 g85176 i0 100 99.9677419354839 341 0 100 0 1 341 856 516 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 34089 630 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
26387255 26387255 PRJNA737474c_S_NODE_15039_length_303_cov_3.234783_g14208_i0 PRJNA737474 15039 303 3.234783 9.80139249 Chlamydomonas reinhardtii 3055 Plants Plants 106 2.14e-18   NTclustered gi|2082261495|ref|XM_001692933.2| 3055 g14208 i0 79.221 3.34653465346535 154 30 50 2 133 285 929 777 Chlamydomonas reinhardtii ribosomal protein L8 (CHLRE_12g535851v5), mRNA blastn 1014 106 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
26388273 26388273 PRJNA737474c_S_NODE_32207_length_209_cov_6.470588_g31376_i0 PRJNA737474 32207 209 6.470588 13.52352892 Chlamydomonas reinhardtii 3055 Plants Plants 110 1.07e-19   NTclustered gi|2082260798|ref|XM_001697008.2| 3055 g31376 i0 89.011 0.956937799043062 91 7 42 1 122 209 1030 940 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g520500v5), mRNA blastn 200 110 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
26390274 26390274 PRJNA737474d_S_NODE_37943_length_249_cov_0.982955_g37349_i0 PRJNA737474 37943 249 0.982955 2.44755795 Chlorella variabilis 554065 Plants Plants 104 6.13e-18   NTclustered gi|552841750|ref|XM_005850330.1| 554065 g37349 i0 78.788 0.662650602409639 165 27 65 5 14 174 457 617 Chlorella variabilis hypothetical protein (CHLNCDRAFT_59607) mRNA, complete cds blastn 165 104 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
26399923 26399923 PRJNA737474g_S_NODE_165679_length_290_cov_1.336406_g164385_i0 PRJNA737474 165679 290 1.336406 3.8755774 Dicloster acuatus 91190 Plants Plants 141 5.57e-29   NTclustered gi|2724824305|gb|PP746556.1| 91190 g164385 i0 86.364 1.88965517241379 132 15 45 3 9 138 56985 57115 Dicloster acuatus culture SAG:41.98 mitochondrion, complete genome blastn 548 141 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dicloster Dicloster acuatus
26404048 26404048 PRJNA737474g_S_NODE_418559_length_242_cov_3.378698_g417265_i0 PRJNA737474 418559 242 3.378698 8.17644916 Volvox carteri f. nagariensis 3068 Plants Plants 52.8 0.022   NTclustered gi|302842366|ref|XM_002952681.1| 3068 g417265 i0 100 0.115702479338843 28 0 12 0 81 108 8487 8514 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_118140), partial mRNA blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
26442185 26442185 PRJNA737474b_S_NODE_24639_length_323_cov_2.664000_g23600_i0 PRJNA737474 24639 323 2.664 8.60472 Eukaryota 2759 Plants Plants 211 4.73e-50   NTclustered gi|760449500|ref|XM_011403517.1| 3075 g23600 i0 83.406 66.7987616099071 229 36 71 2 89 316 738 511 Auxenochlorella protothecoides 60S ribosomal protein L8 partial mRNA blastn 21576 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
26520708 26520708 PRJNA737474b_S_NODE_18816_length_369_cov_4.091216_g17777_i0 PRJNA737474 18816 369 4.091216 15.09658704 Polytomella sp. Pringsheim 198.8 37502 Plants Plants 73.1 2.69e-8   NTclustered gi|635557401|emb|FR668147.1| 37502 g17777 i0 78.4 0.67479674796748 125 18 34 4 88 212 899 1014 Polytomella sp. Pringsheim 198.80 mRNA for 60S acidic ribosomal protein P0 (rplP0 gene) blastn 249 73.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
26532148 26532148 PRJNA737474f_S_NODE_301640_length_235_cov_2.895062_g300962_i0 PRJNA737474 301640 235 2.895062 6.8033957 Volvox africanus 51714 Plants Plants 56.5 0.002   NTclustered gi|1996223730|dbj|LC586641.1| 51714 g300962 i0 97.059 0.14468085106383 34 0 14 1 94 127 1175227 1175259 Volvox africanus NIES-3780 genes for SD-like region, sequence_id: longSDRlike, male, complete sequence blastn 34 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;