RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA734348" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734348 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10125475 10125475 PRJNA734348_P_NODE_128048_length_242_cov_0.911243_g127350_i0 PRJNA734348 128048 242 0.911243 2.20520806 Rubrivirga 1434037 Bacteria Bacteria 202 2.0499999999999998e-47   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g127350 i0 81.893 99.4669421487603 243 41 99 3 2 242 2465771 2466012 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 24071 202 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
13470923 13470923 PRJNA734348_P_NODE_123031_length_243_cov_1.529412_g122333_i0 PRJNA734348 123031 243 1.529412 3.71647116 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 195 3.4399999999999997e-45   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g122333 i0 83.028 25.1522633744856 218 33 89 4 4 219 2083496 2083281 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 6112 195 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
14745803 14745803 PRJNA734348_P_NODE_10812_length_706_cov_1.382306_g10178_i0 PRJNA734348 10812 706 1.382306 9.75908036 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 968 0   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g10178 i0 92.794 216.171388101983 680 32 96 4 27 706 1308742 1308080 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 152617 968 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium
15226030 15226030 PRJNA734348_P_NODE_74952_length_265_cov_1.572917_g74254_i0 PRJNA734348 74952 265 1.572917 4.16823005 Rhodothermales 1853224 Bacteria Bacteria 294 3.64e-75   NTclustered gi|2844596544|gb|CP172416.1| 29549 g74254 i0 86.94 111.283018867925 268 28 100 6 1 265 3095284 3095547 Rhodothermus marinus strain ISCAR-493 chromosome blastn 29490 296 0.993243243243243 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
16499821 16499821 PRJNA734348_P_NODE_109913_length_246_cov_3.352601_g109215_i0 PRJNA734348 109913 246 3.352601 8.24739846 Rhodothermales 1853224 Bacteria Bacteria 189 1.62e-43   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g109215 i0 80.723 8.60975609756098 249 42 100 6 1 246 4650755 4650510 Rhodothermaceae bacterium RA chromosome, complete genome blastn 2118 189 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
21599524 21599524 PRJNA734348_P_NODE_5237_length_1156_cov_3.706371_g4794_i0 PRJNA734348 5237 1156 3.706371 42.84564876 Rhodothermales 1853224 Bacteria Bacteria 1347 0   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g4794 i0 87.778 330.730968858131 1170 120 100 21 1 1156 2905650 2906810 Rhodothermaceae bacterium RA chromosome, complete genome blastn 382325 1347 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;