RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA734348" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA734348 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5025655 5025655 PRJNA734348_P_NODE_57184_length_282_cov_2.421053_g56487_i0 PRJNA734348 57184 282 2.421053 6.82736946 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 521 1.6499999999999996e-143   NTclustered gi|166048041|emb|CU364162.1| 100861 g56487 i0 100 100.028368794326 282 0 100 0 1 282 196 477 Aphanomyces euteiches cDNA blastn 28208 521 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13472096 13472096 PRJNA734348_P_NODE_44671_length_301_cov_2.771930_g43974_i0 PRJNA734348 44671 301 2.77193 8.3435093 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 501 2.31e-137   NTclustered gi|325194231|emb|FR825088.1| 890382 g43974 i0 96.678 1.37541528239203 301 10 100 0 1 301 365 665 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 414 501 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14746422 14746422 PRJNA734348_P_NODE_142432_length_229_cov_2.064103_g141734_i0 PRJNA734348 142432 229 2.064103 4.72679587 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 294 3.07e-75   NTclustered gi|325195136|emb|FR825930.1| 890382 g141734 i0 89.627 2.96069868995633 241 12 100 7 1 229 403 164 Albugo laibachii Nc14, genomic contig CONTIG_2990_NC14_v4_499_54 blastn 678 294 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
17295248 17295248 PRJNA734348_P_NODE_126294_length_242_cov_2.958580_g125596_i0 PRJNA734348 126294 242 2.95858 7.1597636 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 243 1.2100000000000004e-59   NTclustered gi|325194423|emb|FR825253.1| 890382 g125596 i0 84.898 4.87603305785124 245 31 100 5 1 242 839 598 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 1180 243 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18570022 18570022 PRJNA734348_P_NODE_41695_length_310_cov_2.565401_g40999_i0 PRJNA734348 41695 310 2.565401 7.9527431 Peronospora aparines 162109 SAR_Eukaryotes SAR_Eukaryotes 278 4.39e-70   NTclustered gi|23306501|gb|AY035484.1| 162109 g40999 i0 100 81.6483870967742 150 0 97 0 1 150 677 528 Peronospora aparines isolate MG 4-5 large subunit ribosomal RNA gene, partial sequence blastn 25311 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora aparines

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;