RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA734348" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734348 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1992849 1992849 PRJNA734348_P_NODE_106462_length_247_cov_1.770115_g105764_i0 PRJNA734348 106462 247 1.770115 4.37218405 Caenorhabditis elegans 6239 Nematoda Nematoda 457 4.05e-124   NTclustered gi|687865956|emb|LK928046.1| 6239 g105764 i0 100 83.5303643724696 247 0 100 0 1 247 46405 46159 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000432 blastn 20632 457 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
6301278 6301278 PRJNA734348_P_NODE_37525_length_319_cov_1.516260_g36829_i0 PRJNA734348 37525 319 1.51626 4.8368694 Diplogasteridae 50861 Nematoda Nematoda 283 9.74e-72   NTclustered gi|675118776|gb|KJ877247.1| 1538690 g36829 i0 84.828 50.4294670846395 290 34 89 9 1 285 3164 3448 Butlerius sp. VS-2014 28S ribosomal RNA gene, partial sequence blastn 16087 283 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Butlerius Butlerius sp. VS-2014
9645392 9645392 PRJNA734348_P_NODE_110668_length_246_cov_1.722543_g109970_i0 PRJNA734348 110668 246 1.722543 4.23745578 Diploscapter sp. JU359 479134 Nematoda Nematoda 453 5.2100000000000006e-123   NTclustered gi|158821895|gb|EU195959.1| 479134 g109970 i0 100 89.0731707317073 245 0 99 0 2 246 1184 940 Diploscapter sp. JU359 28S ribosomal RNA gene, partial sequence blastn 21912 453 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter sp. JU359
18570732 18570732 PRJNA734348_P_NODE_80355_length_260_cov_2.101604_g79657_i0 PRJNA734348 80355 260 2.101604 5.4641704 Caenorhabditis elegans 6239 Nematoda Nematoda 481 2.55e-131   NTclustered gi|412977031|emb|AL110479.3| 6239 g79657 i0 100 2 260 0 100 0 1 260 282058 281799 Caenorhabditis elegans YAC Y105C5B, complete sequence blastn 520 481 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;