RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA734348" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734348 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13472347 13472347 PRJNA734348_P_NODE_57591_length_282_cov_1.444976_g56894_i0 PRJNA734348 57591 282 1.444976 4.07483232 Ignavibacteria bacterium 2053306 Bacteria Bacteria 390 4.8499999999999996e-104   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g56894 i0 95.492 47.7659574468085 244 11 100 0 1 244 547033 547276 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 13470 390 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium
21119514 21119514 PRJNA734348_P_NODE_112577_length_246_cov_0.890173_g111879_i0 PRJNA734348 112577 246 0.890173 2.18982558 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 54.7 0.006   NTclustered gi|2621704225|emb|OY761615.1| 2651163 g111879 i0 100 0.117886178861789 29 0 12 0 53 81 3594714 3594742 MAG: Ignavibacteriaceae bacterium isolate 0c874fb2-9291-49ee-bde1-826c4484edf3 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;