RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA734348" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734348 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
717591 717591 PRJNA734348_P_NODE_148941_length_202_cov_9.713178_g148243_i0 PRJNA734348 148941 202 9.713178 19.62061956 Spizellomyces sp. 110146 Fungi Fungi 106 1.33e-18   NTclustered gi|1866582619|gb|MT730794.1| 110146 g148243 i0 76.887 49.2970297029703 212 34 100 13 1 202 4951 5157 Spizellomyces sp. isolate JEL0722 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9958 106 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces sp.
12197574 12197574 PRJNA734348_P_NODE_42550_length_308_cov_3.178723_g41853_i0 PRJNA734348 42550 308 3.178723 9.79046684 Orpinomyces sp. OUS1 301046 Fungi Fungi 119 2.7900000000000003e-22   NTclustered gi|55859492|emb|AJ864475.1| 301046 g41853 i0 89.362 32.3441558441558 94 10 31 0 1 94 4631 4724 Orpinomyces sp. OUS1 partial 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and partial 28S rRNA, clone V5-1 blastn 9962 119 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Orpinomyces Orpinomyces sp. OUS1
23670114 23670114 PRJNA734348_P_NODE_11899_length_656_cov_5.142367_g11248_i0 PRJNA734348 11899 656 5.142367 33.73392752 Piromyces sp. 45796 Fungi Fungi 623 1.1e-173   NTclustered gi|1388116266|gb|MH043820.1| 45796 g11248 i0 100 99.6615853658537 337 0 51 0 320 656 582 246 Piromyces sp. strain B5 Glycosyl hydrolase family 43 mRNA, partial cds blastn 65378 623 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;