RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "blastn", bioproject = "PRJNA734348" and tax_kingdom = "Orthornavirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 19 ✖

bioproject 1

  • PRJNA734348 · 19 ✖

analysis 1

  • blastn · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3268435 3268435 PRJNA734348_P_NODE_123223_length_243_cov_1.358824_g122525_i0 PRJNA734348 123223 243 1.358824 3.30194232 Betacystovirus phi12 3427160 Viruses Viruses 427 3.11e-115   NTclustered gi|22855216|ref|NC_004174.1| 161736 g122525 i0 98.354 1 243 4 100 0 1 243 1162 920 Pseudomonas phage phi12 segment S, complete sequence blastn 243 427 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
4545617 4545617 PRJNA734348_P_NODE_124724_length_243_cov_0.905882_g124026_i0 PRJNA734348 124724 243 0.905882 2.20129326 Chemarfal virus 258 3063149 Viruses Viruses 375 1.14e-99   NTclustered gi|2626079799|gb|OR270470.1| 3063149 g124026 i0 94.628 1.9917695473251 242 13 99 0 2 243 411 170 MAG: Chemarfal virus 258 isolate ML188 genomic sequence blastn 484 375 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales     Chemarfal virus 258
7096021 7096021 PRJNA734348_P_NODE_134566_length_240_cov_3.868263_g133868_i0 PRJNA734348 134566 240 3.868263 9.2838312 Ripastyr virus 3131364 Viruses Viruses 435 1.83e-117   NTclustered gi|2717322326|gb|PP173666.1| 3131364 g133868 i0 99.58 1071.22916666667 238 1 99 0 1 238 289 526 MAG: Ripastyr virus isolate MP3_k141_6580 genomic sequence blastn 257095 435 1 Viruses   Orthornavirae Lenarviricota Leviviricetes       Ripastyr virus
7096438 7096438 PRJNA734348_P_NODE_20886_length_438_cov_1.454795_g20195_i0 PRJNA734348 20886 438 1.454795 6.3720021 Betacystovirus phi12 3427160 Viruses Viruses 719 0   NTclustered gi|22855221|ref|NC_004175.1| 161736 g20195 i0 96.339 0.997716894977169 437 16 99 0 2 438 602 1038 Pseudomonas phage phi12 segment M, complete sequence blastn 437 719 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
8371091 8371091 PRJNA734348_P_NODE_22707_length_414_cov_2.158358_g22012_i0 PRJNA734348 22707 414 2.158358 8.93560212 Betacystovirus phi12 3427160 Viruses Viruses 726 0   NTclustered gi|22855221|ref|NC_004175.1| 161736 g22012 i0 98.313 1.0024154589372 415 6 100 1 1 414 554 140 Pseudomonas phage phi12 segment M, complete sequence blastn 415 726 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
9647033 9647033 PRJNA734348_P_NODE_5928_length_1068_cov_3.165829_g5446_i0 PRJNA734348 5928 1068 3.165829 33.81105372 Betacystovirus phi12 3427160 Viruses Viruses 1524 0   NTclustered gi|22855209|ref|NC_004173.1| 161736 g5446 i0 92.416 1 1068 81 100 0 1 1068 20 1087 Pseudomonas phage phi12 segment L, complete sequence blastn 1068 1524 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
10921849 10921849 PRJNA734348_P_NODE_27369_length_372_cov_2.096990_g26674_i0 PRJNA734348 27369 372 2.09699 7.8008028 Betacystovirus phi12 3427160 Viruses Viruses 582 1.0099999999999999e-161   NTclustered gi|22855221|ref|NC_004175.1| 161736 g26674 i0 94.892 1 372 19 100 0 1 372 3354 2983 Pseudomonas phage phi12 segment M, complete sequence blastn 372 582 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
12197248 12197248 PRJNA734348_P_NODE_26850_length_376_cov_1.930693_g26155_i0 PRJNA734348 26850 376 1.930693 7.25940568 Tobamovirus capsici 3432865 Viruses Viruses 667 0   NTclustered gi|1893169063|gb|MT130388.1| 12239 g26155 i0 99.455 95.5478723404255 367 2 98 0 10 376 2769 3135 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 35926 667 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
12197299 12197299 PRJNA734348_P_NODE_29550_length_358_cov_1.059649_g28854_i0 PRJNA734348 29550 358 1.059649 3.7935434200000002 Betacystovirus phi12 3427160 Viruses Viruses 579 1.2599999999999999e-160   NTclustered gi|22855221|ref|NC_004175.1| 161736 g28854 i0 95.81 1 358 15 100 0 1 358 1895 2252 Pseudomonas phage phi12 segment M, complete sequence blastn 358 579 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
12197796 12197796 PRJNA734348_P_NODE_53370_length_286_cov_2.169014_g52673_i0 PRJNA734348 53370 286 2.169014 6.20338004 Betacystovirus phi12 3427160 Viruses Viruses 435 2.25e-117   NTclustered gi|22855221|ref|NC_004175.1| 161736 g52673 i0 94.056 1 286 17 100 0 1 286 3481 3766 Pseudomonas phage phi12 segment M, complete sequence blastn 286 435 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
12198146 12198146 PRJNA734348_P_NODE_71250_length_268_cov_2.758974_g70552_i0 PRJNA734348 71250 268 2.758974 7.39405032 Betacystovirus phi12 3427160 Viruses Viruses 479 9.499999999999996e-131   NTclustered gi|22855216|ref|NC_004174.1| 161736 g70552 i0 98.881 1 268 3 100 0 1 268 1563 1830 Pseudomonas phage phi12 segment S, complete sequence blastn 268 479 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
13471578 13471578 PRJNA734348_P_NODE_21051_length_435_cov_6.121547_g20360_i0 PRJNA734348 21051 435 6.121547 26.62872945 Betacystovirus phi12 3427160 Viruses Viruses 776 0   NTclustered gi|22855216|ref|NC_004174.1| 161736 g20360 i0 98.851 1 435 5 100 0 1 435 32 466 Pseudomonas phage phi12 segment S, complete sequence blastn 435 776 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
13951507 13951507 PRJNA734348_P_NODE_93291_length_251_cov_0.865169_g92593_i0 PRJNA734348 93291 251 0.865169 2.17157419 Orthorubulavirus 2560195 Viruses Viruses 459 1.1499999999999996e-124   NTclustered gi|1806608684|gb|MN604146.1| 2560580 g92593 i0 99.602 67.99203187251 251 1 100 0 1 251 4128 3878 Mammalian orthorubulavirus 5 isolate XJ033, complete genome blastn 17066 459 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Orthorubulavirus Orthorubulavirus mammalis
16020314 16020314 PRJNA734348_P_NODE_19853_length_452_cov_2.678100_g19162_i0 PRJNA734348 19853 452 2.6781 12.105012 Betacystovirus phi12 3427160 Viruses Viruses 409 2.2599999999999996e-109   NTclustered gi|22855209|ref|NC_004173.1| 161736 g19162 i0 82.965 1 452 77 100 0 1 452 1724 1273 Pseudomonas phage phi12 segment L, complete sequence blastn 452 409 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
18570801 18570801 PRJNA734348_P_NODE_83795_length_257_cov_2.135870_g83097_i0 PRJNA734348 83795 257 2.13587 5.4891859 Tobamovirus capsici 3432865 Viruses Viruses 440 4.269999999999998e-119   NTclustered gi|1893169063|gb|MT130388.1| 12239 g83097 i0 99.18 94.0155642023346 244 2 95 0 4 247 1782 1539 Pepper mild mottle virus isolate M2-PMMoV 180k replication protein gene, partial cds; and movement protein and coat protein genes, complete cds blastn 24162 440 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus capsici
22395562 22395562 PRJNA734348_P_NODE_34678_length_331_cov_1.720930_g33982_i0 PRJNA734348 34678 331 1.72093 5.6962783 Betacystovirus phi12 3427160 Viruses Viruses 606 5.299999999999998e-169   NTclustered gi|22855216|ref|NC_004174.1| 161736 g33982 i0 99.698 1 331 1 100 0 1 331 1497 1167 Pseudomonas phage phi12 segment S, complete sequence blastn 331 606 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
23669960 23669960 PRJNA734348_P_NODE_10999_length_697_cov_1.761218_g10358_i0 PRJNA734348 10999 697 1.761218 12.27568946 Betacystovirus phi12 3427160 Viruses Viruses 1158 0   NTclustered gi|22855221|ref|NC_004175.1| 161736 g10358 i0 96.7 1 697 22 100 1 1 697 2258 2953 Pseudomonas phage phi12 segment M, complete sequence blastn 697 1158 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12
23670375 23670375 PRJNA734348_P_NODE_134159_length_241_cov_0.916667_g133461_i0 PRJNA734348 134159 241 0.916667 2.20916747 Betascleroulivirus thetaplasmoparae 2955488 Viruses Viruses 265 2.5599999999999996e-66   NTclustered gi|2500381320|ref|NC_076772.1| 2686512 g133461 i0 86.611 2.74273858921162 239 32 99 0 1 239 1082 844 Plasmopara viticola lesion associated ourmia-like virus 42 isolate DMG-G_38207 RNA dependent RNA polymerase (QKR47_gp1) gene, complete cds blastn 661 265 1 Viruses   Orthornavirae Lenarviricota Miaviricetes Ourlivirales Botourmiaviridae Betascleroulivirus Betascleroulivirus thetaplasmoparae
24944583 24944583 PRJNA734348_P_NODE_36860_length_321_cov_3.891129_g36164_i0 PRJNA734348 36860 321 3.891129 12.49052409 Betacystovirus phi12 3427160 Viruses Viruses 466 9.08e-127   NTclustered gi|22855221|ref|NC_004175.1| 161736 g36164 i0 92.835 1 321 23 100 0 1 321 1381 1061 Pseudomonas phage phi12 segment M, complete sequence blastn 321 466 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Betacystovirus Betacystovirus phi12

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;