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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA734348" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA734348 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
718591 718591 PRJNA734348_P_NODE_61001_length_278_cov_3.141463_g60304_i0 PRJNA734348 61001 278 3.141463 8.73326714 uncultured delta proteobacterium HF4000_08N17 710836 Bacteria Bacteria 187 6.7199999999999984e-43   NTclustered gi|297182206|gb|GU474888.1| 710836 g60304 i0 92.424 114.81654676259 132 9 47 1 5 136 15003 15133 Uncultured delta proteobacterium HF4000_08N17 genomic sequence blastn 31919 187 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF4000_08N17
13471445 13471445 PRJNA734348_P_NODE_15331_length_543_cov_3.274468_g14648_i0 PRJNA734348 15331 543 3.274468 17.78036124 uncultured delta proteobacterium 34034 Bacteria Bacteria 274 1.0499999999999998e-68   NTclustered gi|2874253674|emb|OY969108.1| 34034 g14648 i0 76.243 58 543 114 98 14 3 535 1541662 1541125 MAG: uncultured delta proteobacterium isolate MFD01828.bin.c.1 genome assembly, chromosome: 1 blastn 31494 274 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
13472246 13472246 PRJNA734348_P_NODE_52031_length_288_cov_1.213953_g51334_i0 PRJNA734348 52031 288 1.213953 3.49618464 uncultured delta proteobacterium 34034 Bacteria Bacteria 139 1.99e-28   NTclustered gi|2874253659|emb|OY969087.1| 34034 g51334 i0 76.894 0.916666666666667 264 49 89 11 7 263 1082525 1082783 MAG: uncultured delta proteobacterium isolate MFD01721.bin.c.1 genome assembly, chromosome: 1 blastn 264 139 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
18569709 18569709 PRJNA734348_P_NODE_26735_length_377_cov_1.740132_g26040_i0 PRJNA734348 26735 377 1.740132 6.56029764 Microvenator marinus 2600177 Bacteria Bacteria 381 4.029999999999999e-101   NTclustered gi|1722470586|gb|CP042467.1| 2600177 g26040 i0 85.255 252.68700265252 373 52 98 3 1 371 702491 702120 Microvenator marinus strain V1718 chromosome, complete genome blastn 95263 381 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Microvenatoraceae Microvenator Microvenator marinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;