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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA734348" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 14 ✖

bioproject 1

  • PRJNA734348 · 14 ✖

analysis 1

  • blastn · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1197389 1197389 PRJNA734348_P_NODE_66361_length_273_cov_1.925000_g65664_i0 PRJNA734348 66361 273 1.925 5.25525 Prototheca 3110 Plants Plants 505 1.6e-138   NTclustered gi|1562121201|gb|MK445207.1| 3111 g65664 i0 100 95.2600732600733 273 0 100 0 1 273 313 41 Prototheca wickerhamii strain UTEX 1437 from USA small subunit ribosomal RNA gene, partial sequence blastn 26006 505 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
1994922 1994922 PRJNA734348_P_NODE_77102_length_263_cov_1.621053_g76404_i0 PRJNA734348 77102 263 1.621053 4.26336939 Protosiphon botryoides 44656 Plants Plants 414 2.66e-111   NTclustered gi|1509778905|gb|MG778499.1| 44656 g76404 i0 95.437 131.296577946768 263 6 100 5 1 263 35169 34913 Protosiphon botryoides ribosomal protein S2 (rps2) gene, complete cds; tRNA-Asp (trnD(guc)) gene, complete sequence; 10 kDa phosphoprotein of photosystem II (psbH), photosystem II protein N (psbN), photosystem II protein T (psbT), and PSII 47 kDa protein (psbB) genes, complete cds; tRNA-Tyr (trnY(gua)) gene, complete sequence; ribosomal protein S11 (rps11), P700 apoprotein A2 of photosystem I (psaB), and RNA polymerase alpha subunit (rpoA) genes, complete cds; tRNA-Met (trnM(cau)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; hypothetical chloroplast RF12 (ycf12) gene, complete cds; tRNA-Ser (trnS(gcu)) gene, complete sequence; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; tRNA-Leu (trnL(uaa)) gene, complete sequence; hypothetical chloroplast RF3 (ycf3), hypothetical chloroplast protein RF4 (ycf4), ribosomal protein S9 (rps9), photosystem II protein V (psbE), ATP synthase CF0 B subunit (atpF), ATP synthase CF0 C subunit (atpH), ATP synthase CF1 epsilon subunit (atpE), ribosomal protein S7 (rps7), ribosomal protein S14 (rps14), M protein of photosystem II (psbM), photosystem II reaction center Z protein (psbZ), and heme attachment to plastid cytochrome c (ccsA) genes, complete cds; 5S ribosomal RNA (rrf), large subunit ribosomal RNA (rrl), tRNA-Ala (trnA(ugc)), tRNA-Ile (trnI(gau)), and small subunit ribosomal RNA (rrs) genes, complete sequence; protochlorophyllide reductase subunit B (chlB) gene, complete cds; tRNA-Arg (trnR(ucu)) gene, complete sequence; cytochrome b6/f complex subunit 4 (petD), apocytochrome f of cytochrome b6/f complex (petA), and RNA polymerase beta' subunit (rpoC1) genes, complete cds; tRNA-Pro (trnP(ugg)) and tRNA-Val (trnV(uac)) genes, complete sequence; translation elongation factor Tu (tufA) gene, complete cds; tRNA-Glu (trnE(uuc)) gene, complete sequence; ribosomal protein L36 (rpl36) and apocytochrome b6 of cytochrome b6/f complex (petB) genes, complete cds; tRNA-His (trnH(gug)) gene, complete sequence; ribosomal protein S12 (rps12), phot… blastn 34531 414 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Protosiphonaceae Protosiphon Protosiphon botryoides
2472615 2472615 PRJNA734348_P_NODE_39262_length_312_cov_4.025105_g38566_i0 PRJNA734348 39262 312 4.025105 12.5583276 Trebouxiophyceae 75966 Plants Plants 161 4.65e-35   NTclustered gi|1169296931|gb|KY364701.1| 63676 g38566 i0 88.148 9.22435897435897 135 16 43 0 178 312 5552 5418 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 2878 161 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
5025319 5025319 PRJNA734348_P_NODE_18864_length_469_cov_2.512626_g18174_i0 PRJNA734348 18864 469 2.512626 11.78421594 Eukaryota 2759 Plants Plants 806 0   NTclustered gi|1189013852|gb|MF034633.1| 43939 g18174 i0 97.655 100.00852878464801 469 11 100 0 1 469 617 1085 Hazenia basiliensis strain ULVO-15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 46904 811 0.99383477188656 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Hazeniaceae Hazenia Hazenia basiliensis
6301615 6301615 PRJNA734348_P_NODE_89565_length_252_cov_2.944134_g88867_i0 PRJNA734348 89565 252 2.944134 7.41921768 Scenedesmaceae 3086 Plants Plants 399 7.079999999999999e-107   NTclustered gi|2692951716|ref|NC_086754.1| 119574 g88867 i0 95.238 115.015873015873 252 12 100 0 1 252 89543 89794 Tetradesmus dimorphus strain FBCC-A0330 chloroplast, complete genome blastn 28984 399 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus dimorphus
8370258 8370258 PRJNA734348_P_NODE_113787_length_246_cov_0.849711_g113089_i0 PRJNA734348 113787 246 0.849711 2.09028906 Coelastrella saipanensis 152631 Plants Plants 375 1.16e-99   NTclustered gi|1642520538|ref|NC_042181.1| 152631 g113089 i0 96.104 157.467479674797 231 8 94 1 1 231 109885 109656 Coelastrella saipanensis chloroplast, complete genome blastn 38737 375 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrella Coelastrella saipanensis
8372003 8372003 PRJNA734348_P_NODE_69047_length_270_cov_4.055838_g68349_i0 PRJNA734348 69047 270 4.055838 10.9507626 Chlorosarcinopsis eremi 332213 Plants Plants 394 3.57e-105   NTclustered gi|1432231416|gb|MH654823.1| 332213 g68349 i0 93.015 72.5703703703704 272 15 100 4 1 270 3643 3374 Chlorosarcinopsis eremi strain MKA.28 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19594 394 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
10125701 10125701 PRJNA734348_P_NODE_22568_length_416_cov_0.883382_g21873_i0 PRJNA734348 22568 416 0.883382 3.67486912 Prototheca 3110 Plants Plants 689 0   NTclustered gi|1334452569|gb|MG832932.1| 3112 g21873 i0 99.734 97.6778846153846 376 1 100 0 41 416 946 571 Prototheca zopfii isolate o23c small subunit ribosomal RNA gene, partial sequence blastn 40634 689 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca zopfii
11401238 11401238 PRJNA734348_P_NODE_88589_length_253_cov_2.200000_g87891_i0 PRJNA734348 88589 253 2.2 5.566 Prototheca 3110 Plants Plants 451 1.94e-122   NTclustered gi|378925972|gb|JQ070133.1| 3112 g87891 i0 99.2 61.2252964426877 250 2 99 0 4 253 556 307 Prototheca zopfii strain ATCC MYA-4789 28S ribosomal RNA gene, complete sequence blastn 15490 451 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca zopfii
13951466 13951466 PRJNA734348_P_NODE_86631_length_255_cov_1.478022_g85933_i0 PRJNA734348 86631 255 1.478022 3.7689561 Eukaryota 2759 Plants Plants 460 3.25e-125   NTclustered gi|1898545223|gb|MT951391.1| 3078 g85933 i0 99.216 99.2470588235294 255 2 100 0 1 255 1662 1408 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 25308 460 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
14748158 14748158 PRJNA734348_P_NODE_95872_length_250_cov_0.870056_g95174_i0 PRJNA734348 95872 250 0.870056 2.17514 Trebouxia sp. SL0000003 3350044 Plants Plants 56.5 0.002   NTclustered gi|2917929696|emb|OZ234923.1| 3350044 g95174 i0 100 0.792 30 0 12 0 212 241 2061772 2061743 Trebouxia sp. SL0000003 genome assembly, chromosome: 18 blastn 198 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
17297071 17297071 PRJNA734348_P_NODE_82934_length_258_cov_1.616216_g82236_i0 PRJNA734348 82934 258 1.616216 4.16983728 Gloeotilopsis planctonica 34157 Plants Plants 427 3.34e-115   NTclustered gi|1052423830|gb|KX306824.1| 34157 g82236 i0 96.512 43.2403100775194 258 9 100 0 1 258 9924 10181 Gloeotilopsis planctonica chloroplast, complete genome blastn 11156 427 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Ulotrichaceae Gloeotilopsis Gloeotilopsis planctonica
22396693 22396693 PRJNA734348_P_NODE_97838_length_250_cov_0.870056_g97140_i0 PRJNA734348 97838 250 0.870056 2.17514 Protosiphon botryoides 44656 Plants Plants 200 7.639999999999999e-47   NTclustered gi|1509778905|gb|MG778499.1| 44656 g97140 i0 92.754 56.956 138 10 76 0 60 197 35684 35821 Protosiphon botryoides ribosomal protein S2 (rps2) gene, complete cds; tRNA-Asp (trnD(guc)) gene, complete sequence; 10 kDa phosphoprotein of photosystem II (psbH), photosystem II protein N (psbN), photosystem II protein T (psbT), and PSII 47 kDa protein (psbB) genes, complete cds; tRNA-Tyr (trnY(gua)) gene, complete sequence; ribosomal protein S11 (rps11), P700 apoprotein A2 of photosystem I (psaB), and RNA polymerase alpha subunit (rpoA) genes, complete cds; tRNA-Met (trnM(cau)) and tRNA-Lys (trnK(uuu)) genes, complete sequence; hypothetical chloroplast RF12 (ycf12) gene, complete cds; tRNA-Ser (trnS(gcu)) gene, complete sequence; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (rbcL) gene, complete cds; tRNA-Leu (trnL(uaa)) gene, complete sequence; hypothetical chloroplast RF3 (ycf3), hypothetical chloroplast protein RF4 (ycf4), ribosomal protein S9 (rps9), photosystem II protein V (psbE), ATP synthase CF0 B subunit (atpF), ATP synthase CF0 C subunit (atpH), ATP synthase CF1 epsilon subunit (atpE), ribosomal protein S7 (rps7), ribosomal protein S14 (rps14), M protein of photosystem II (psbM), photosystem II reaction center Z protein (psbZ), and heme attachment to plastid cytochrome c (ccsA) genes, complete cds; 5S ribosomal RNA (rrf), large subunit ribosomal RNA (rrl), tRNA-Ala (trnA(ugc)), tRNA-Ile (trnI(gau)), and small subunit ribosomal RNA (rrs) genes, complete sequence; protochlorophyllide reductase subunit B (chlB) gene, complete cds; tRNA-Arg (trnR(ucu)) gene, complete sequence; cytochrome b6/f complex subunit 4 (petD), apocytochrome f of cytochrome b6/f complex (petA), and RNA polymerase beta' subunit (rpoC1) genes, complete cds; tRNA-Pro (trnP(ugg)) and tRNA-Val (trnV(uac)) genes, complete sequence; translation elongation factor Tu (tufA) gene, complete cds; tRNA-Glu (trnE(uuc)) gene, complete sequence; ribosomal protein L36 (rpl36) and apocytochrome b6 of cytochrome b6/f complex (petB) genes, complete cds; tRNA-His (trnH(gug)) gene, complete sequence; ribosomal protein S12 (rps12), phot… blastn 14239 200 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Protosiphonaceae Protosiphon Protosiphon botryoides
23669984 23669984 PRJNA734348_P_NODE_111599_length_246_cov_0.890173_g110901_i0 PRJNA734348 111599 246 0.890173 2.18982558 Ulva laetevirens 585852 Plants Plants 52.8 0.022   NTclustered gi|2181839309|gb|MW531676.1| 585852 g110901 i0 100 0.113821138211382 28 0 11 0 176 203 37002 36975 Ulva laetevirens isolate CNS00533 chloroplast, complete genome blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva laetevirens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;