RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA734313" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA734313 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13470444 13470444 PRJNA734313_S_NODE_13011_length_260_cov_8.924883_g12898_i0 PRJNA734313 13011 260 8.924883 23.2046958 Malaciobacter marinus 505249 Bacteria Bacteria 52.8 0.024   NTclustered gi|1474785413|gb|CP032101.1| 505249 g12898 i0 100 0.107692307692308 28 0 11 0 95 122 1771318 1771291 Malaciobacter marinus strain JCM 15502 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Malaciobacter Malaciobacter marinus
13950680 13950680 PRJNA734313_S_NODE_30431_length_167_cov_1.308333_g30318_i0 PRJNA734313 30431 167 1.308333 2.18491611 Campylobacter 194 Bacteria Bacteria 292 7.58e-75   NTclustered gi|2427057555|gb|CP115609.1| 2984142 g30318 i0 98.204 294.299401197605 167 3 100 0 1 167 989577 989411 Campylobacter sp. CS_NA3 strain Cs NA3 chromosome blastn 49148 292 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. CS_NA3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;