RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA734313" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734313 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9645180 9645180 PRJNA734313_S_NODE_21468_length_201_cov_1.564935_g21355_i0 PRJNA734313 21468 201 1.564935 3.14551935 Trichoderma atroviride 63577 Fungi Fungi 86.1 1.72e-12   NTclustered gi|2749703766|ref|XM_014090103.2| 63577 g21355 i0 88 2.19402985074627 75 6 37 1 126 200 2269 2198 Trichoderma atroviride uncharacterized protein (TrAtP1_012533), partial mRNA blastn 441 86.1 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Hypocreaceae Trichoderma Trichoderma atroviride
12676353 12676353 PRJNA734313_S_NODE_16350_length_232_cov_1.832432_g16237_i0 PRJNA734313 16350 232 1.832432 4.25124224 Ascomycota 4890 Fungi Fungi 424 3.82e-114   NTclustered gi|1050550576|gb|KX664397.1| 29917 g16237 i0 99.569 100 232 1 100 0 1 232 770 539 Cladosporium cladosporioides isolate F42-01 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23200 424 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium cladosporioides
12676362 12676362 PRJNA734313_S_NODE_36550_length_157_cov_1326.381818_g36437_i0 PRJNA734313 36550 157 1326.381818 2082.41945426 root 1 Root_unresolved Root_unresolved 106 9.8e-19   NTclustered gi|193072614|dbj|AB293446.1| 4932 g36437 i0 98.333 73.0700636942675 60 1 38 0 98 157 44098 44039 Saccharomyces cerevisiae gene for aquaporin Aqy1, complete cds, clone: COS5 blastn 11472 106 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
17774528 17774528 PRJNA734313_S_NODE_2154_length_512_cov_42.748387_g2046_i0 PRJNA734313 2154 512 42.748387 218.87174144 root 1 Root_unresolved Root_unresolved 627 6.55e-175   NTclustered gi|193072614|dbj|AB293446.1| 4932 g2046 i0 88.824 101.609375 510 57 99 0 3 512 42758 42249 Saccharomyces cerevisiae gene for aquaporin Aqy1, complete cds, clone: COS5 blastn 52024 632 0.992088607594937 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae
23669736 23669736 PRJNA734313_S_NODE_12899_length_262_cov_1.353488_g12786_i0 PRJNA734313 12899 262 1.353488 3.54613856 Ramularia collo-cygni 112498 Fungi Fungi 73.1 1.83e-8   NTclustered gi|1338077479|ref|XM_023765492.1| 112498 g12786 i0 93.75 0.183206106870229 48 3 18 0 193 240 144 97 Ramularia collo-cygni uncharacterized protein (RCC_00340), partial mRNA blastn 48 73.1 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Mycosphaerellales Mycosphaerellaceae Ramularia Ramularia collo-cygni
24148389 24148389 PRJNA734313_S_NODE_28239_length_174_cov_1.433071_g28126_i0 PRJNA734313 28239 174 1.433071 2.49354354 root 1 Root_unresolved Root_unresolved 322 1.01e-83   NTclustered gi|2612872|gb|AF010303.1| 63354 g28126 i0 100 100 174 0 100 0 1 174 842 669 Sclerotium sp. BSC-97 18S ribosomal RNA gene, partial sequence blastn 17400 322 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Helotiales Sclerotiniaceae   Sclerotiniaceae sp. BSC-97

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;