RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA734313" and tax_kingdom = "Shotokuvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 4 ✖

bioproject 1

  • PRJNA734313 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
716724 716724 PRJNA734313_S_NODE_761_length_687_cov_2.364063_g684_i0 PRJNA734313 761 687 2.364063 16.24111281 Alphapapillomavirus 7 337042 Viruses Viruses 1264 0   NTclustered gi|1258167396|gb|MF288663.1| 333761 g684 i0 99.854 100 687 1 100 0 1 687 1554 2240 Human papillomavirus 18 isolate C415154_R1_1138896_N-P, complete genome blastn 68700 1264 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Alphapapillomavirus Alphapapillomavirus 7
1992712 1992712 PRJNA734313_S_NODE_22442_length_196_cov_22.395973_g22329_i0 PRJNA734313 22442 196 22.395973 43.89610708 Betapolyomavirus macacae 1891767 Viruses Viruses 97.1 7.72e-16   NTclustered gi|15705935|gb|AF416237.1|AF416237 1891767 g22329 i0 92.537 0.341836734693878 67 5 34 0 116 182 156 222 Simian virus 40 clone G14M12 non-archetypal regulatory sequence blastn 67 97.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
14745622 14745622 PRJNA734313_S_NODE_1132_length_611_cov_26.858156_g1039_i0 PRJNA734313 1132 611 26.858156 164.10333316 Betapolyomavirus macacae 1891767 Viruses Viruses 233 2.01e-56   NTclustered gi|15705935|gb|AF416237.1|AF416237 1891767 g1039 i0 86.385 0.34860883797054 213 29 35 0 15 227 222 10 Simian virus 40 clone G14M12 non-archetypal regulatory sequence blastn 213 233 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
16019212 16019212 PRJNA734313_S_NODE_1133_length_611_cov_26.434397_g1040_i0 PRJNA734313 1133 611 26.434397 161.51416567 Betapolyomavirus macacae 1891767 Viruses Viruses 278 9.18e-70   NTclustered gi|15705938|gb|AF416240.1|AF416240 1891767 g1040 i0 90.141 0.69721767594108 213 21 35 0 385 597 10 222 Simian virus 40 clone G18R15 non-archetypal regulatory sequence blastn 426 278 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;